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rnaseqpower
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RNASeq time course analysis, missing time points for control
RNASeqData
RnaSeqSampleSize
RNASeq
RNASeqPower
5 months ago
drewhaydensteele
• 0
0
votes
1
reply
426
views
Comparing RNASeq data from multiple studies
RNASeqData
RnaSeqSampleSize
RNASeqPower
RNASeq
updated 7 months ago by
Basti
▴ 780 • written 7 months ago by
Luke
• 0
1
vote
3
replies
841
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Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower
edgeR
DifferentialExpression
limma
RNASeq
updated 12 months ago by
Gordon Smyth
50k • written 12 months ago by
Sara
• 0
0
votes
0
replies
519
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Typo in citation for RNASeqPower
RNASeqPower
citation
23 months ago
stephenjjohnson
• 0
0
votes
3
replies
1.9k
views
How to calculate coefficient of variation within group?
edgeR
limma
RNASeqPower
updated 2.2 years ago by
Gordon Smyth
50k • written 3.2 years ago by
Ahdee
▴ 50
0
votes
5
replies
2.2k
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getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.3 years ago by
m.van_iterson
▴ 20 • written 8.3 years ago by
roser.navarro
• 0
0
votes
1
reply
1.2k
views
Depth or # of reads for RNASeqPower
rnaseqpower
9.6 years ago
drnknmstrr
• 0
0
votes
0
replies
1.0k
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Power Calculation of multiple factors design of RNA-sequencing study
edgeR
DESeq
RNASeqPower
edgeR
DESeq
RNASeqPower
10.2 years ago
Guest User
★ 13k
8 results • Page
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Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
Wei Shi
★ 3.6k
Your bam file names should be stored in a vector and then provided to the `files` parameter.
Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
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