Bioconductor Scater

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456

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scater runPCA

updated 7 weeks ago by alan.ocallaghan ▴ 160 • written 7 weeks ago by Najla Abassi • 0

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255

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scran bluster scater scuttle

updated 7 weeks ago by ATpoint ★ 4.1k • written 7 weeks ago by Dario Strbenac ★ 1.5k

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417

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scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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266

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scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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6.8k

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runUMAP scater Matrix

updated 11 weeks ago by Hervé Pagès 16k • written 6 months ago by inzirio ▴ 10

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1.1k

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scuttle scater

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Abbi Edwards • 0

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896

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plotHeatmap scater

11 months ago Alina • 0

7 results • Page 1 of 1

Recent ...

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Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Dario Strbenac ★ 1.5k

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Popular Question to Koen Van den Berge ▴ 180