Bioconductor VariancePartition

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variancePartition

4 weeks ago Le • 0

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variancePartition BiocParallel

5 months ago hayleyw • 0

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879

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variancePartition RNASeqData limma BulkRNAseq RNASeq

updated 5 months ago by Gordon Smyth 50k • written 7 months ago by Gimena • 0

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variancePartition mixedmodel dream

8 months ago hayleyw • 0

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DESeq2 variancePartition

13 months ago • updated 12 months ago Weiqian ▴ 10

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713

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RNAseq variancePartition edgeR dream

14 months ago DH • 0

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variancePa variancePartition limma-voom dream

updated 14 months ago by Gordon Smyth 50k • written 14 months ago by Le • 0

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expression variancePartition edgeR

21 months ago Jonathan • 0

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edgeR limma variancePartition

updated 2.8 years ago by Gordon Smyth 50k • written 2.8 years ago by jackgisby • 0

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limma variancePartition

updated 2.9 years ago by Gordon Smyth 50k • written 2.9 years ago by jarod ▴ 30

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813

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variancePartition limma

3.1 years ago Junghoon ▴ 10

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1.2k

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variancePartition limma BiocParallel

3.1 years ago Junghoon ▴ 10

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1.1k

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BiocParallel limma variancePartition

3.1 years ago • updated 2.9 years ago Junghoon ▴ 10

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dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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variancepartition lme4 mixedmodel

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.7 years ago by c.taylor • 0

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limma voom variancePartition dream

updated 4.6 years ago by gabriel.hoffman ▴ 110 • written 4.9 years ago by Ben ▴ 50

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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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