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vranges
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0
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Formal class VRanges versus Large VRanges
somaticsignatures
vranges
readvcfasvranges
5.7 years ago
guillaume.dachy
• 0
3
votes
4
replies
1.7k
views
Problem when transforming Platypus vcf to VRanges
variantannotation
vcf
readvcf
vranges
updated 5.9 years ago by
Michael Lawrence
★ 11k • written 5.9 years ago by
david.mas
• 0
0
votes
2
replies
1.2k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 5.9 years ago by
Valerie Obenchain
★ 6.8k • written 5.9 years ago by
Jayendra Shinde
• 0
1
vote
2
replies
1.6k
views
Trouble while concatenating VRanges object ()
somaticsignatures
somaticsignatures package
readvcfasvranges
vranges
6.8 years ago • updated 6.7 years ago
guillaume.dachy
• 0
0
votes
3
replies
1.3k
views
about VRanges and filtering somatic variants
vranges
vcf to vranges
7.4 years ago
Bogdan
▴ 670
1
vote
4
replies
1.8k
views
Converting VCF to VRanges
somaticsignatures
vranges
updated 7.9 years ago by
Julian Gehring
★ 1.3k • written 7.9 years ago by
arsala521
▴ 10
1
vote
2
replies
1.5k
views
Combining GRange/VRange objects
granges
vranges
readvcfasvranges
somaticsignatures
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
jpluta26
• 0
3
votes
9
replies
2.1k
views
SomaticSignatures mutationContext (char ',') not in lookup table
SomaticSignatures mutationContext
VRanges
updated 8.7 years ago by
Julian Gehring
★ 1.3k • written 8.7 years ago by
tesa.severson
▴ 10
2
votes
3
replies
2.3k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
9.3 years ago • updated 9.2 years ago
summerela
• 0
3
votes
5
replies
3.0k
views
Add Custom Annotations to Multi-Sample VCF with VariantAnnotation() package
variantannotation
granges
DNAStringSetList
findoverlaps
Vranges
9.3 years ago
summerela
• 0
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Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
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Since batch is orthogonal to the treatment, you just add a batch factor to your model.
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Hi Gordon. Thank you so much. Your reply is extremely helpful, and I feel more confident moving forward with the analysis. Also, very inte…
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