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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
13 hours ago ATpoint ★ 4.1k
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209
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
15 hours ago ATpoint ★ 4.1k
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209
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
18 hours ago ATpoint ★ 4.1k
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Comment: Comment: Problem installing ChAMP on a MacBook
18 hours ago ATpoint ★ 4.1k
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Comment: Comment: How to correctly adjust for gender in edgeR
1 day ago ATpoint ★ 4.1k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
1 day ago ATpoint ★ 4.1k
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151
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Answer: Answer: Differential gene expression analysis results
6 days ago ATpoint ★ 4.1k
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Answer: Answer: normalization using Deseq2
7 days ago ATpoint ★ 4.1k
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352
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Comment: Comment: deseq2 results
8 days ago ATpoint ★ 4.1k
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433
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Comment: Comment: Extremely small p-values using Limma for proteomic data
8 days ago ATpoint ★ 4.1k
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299
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Comment: Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
8 days ago ATpoint ★ 4.1k
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433
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Comment: Comment: Extremely small p-values using Limma for proteomic data
8 days ago ATpoint ★ 4.1k
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215
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Comment: Comment: Couldn't connect to server while using "pathways"
10 days ago ATpoint ★ 4.1k
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251
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Comment: Comment: Too many significant genes when integrating gtex and tcga
11 days ago ATpoint ★ 4.1k
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221
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Answer: Answer: fgsea significant result
11 days ago ATpoint ★ 4.1k
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206
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
14 days ago ATpoint ★ 4.1k
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204
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Answer: Answer: Deseq2 and Normalization of RNA sequencing data
14 days ago ATpoint ★ 4.1k
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206
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
14 days ago ATpoint ★ 4.1k
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299
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Answer: Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
15 days ago ATpoint ★ 4.1k
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133
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Answer: Answer: putting my own expression data in deseq2
16 days ago ATpoint ★ 4.1k
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264
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Comment: Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
17 days ago ATpoint ★ 4.1k
2
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264
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Answer: Answer: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
17 days ago ATpoint ★ 4.1k
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167
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Answer: Answer: ATACseq merge peaks
20 days ago ATpoint ★ 4.1k
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250
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Comment: Comment: Deseq2. decontXcounts not integers. Useful alternative?
20 days ago ATpoint ★ 4.1k
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173
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Comment: Comment: Reproducibility issue with scran together with lapply and BiocParallel
21 days ago ATpoint ★ 4.1k
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2
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173
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Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
22 days ago • updated 21 days ago ATpoint ★ 4.1k
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264
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Comment: Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
22 days ago ATpoint ★ 4.1k
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234
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Answer: Answer: Different Shrunk Log2FC according with reference
22 days ago ATpoint ★ 4.1k
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379
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Comment: Comment: DESeq2 output used for PCA plot on R studio
22 days ago ATpoint ★ 4.1k
2
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1.3k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
26 days ago ATpoint ★ 4.1k
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1
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261
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
27 days ago ATpoint ★ 4.1k
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1
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261
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
28 days ago ATpoint ★ 4.1k
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108
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Comment: Comment: Input Question for deseq.r
28 days ago ATpoint ★ 4.1k
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163
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
28 days ago ATpoint ★ 4.1k
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144
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Comment: Comment: Deseq2 Rlog transformation
4 weeks ago ATpoint ★ 4.1k
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1
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278
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
4 weeks ago ATpoint ★ 4.1k
1
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454
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Comment: Comment: Not fully paired differential gene expression analysis
4 weeks ago ATpoint ★ 4.1k
1
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1
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189
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Comment: Comment: [DiffBind] Obtaining normalization factors
4 weeks ago ATpoint ★ 4.1k
1
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1
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303
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
5 weeks ago ATpoint ★ 4.1k
1
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1
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303
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
5 weeks ago ATpoint ★ 4.1k
1
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1
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303
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
5 weeks ago ATpoint ★ 4.1k
0
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0
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152
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Answer: Answer: Can you find the correct transcript in scRNA seq data
5 weeks ago ATpoint ★ 4.1k
1
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454
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Comment: Comment: Not fully paired differential gene expression analysis
5 weeks ago ATpoint ★ 4.1k
0
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0
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215
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Comment: Comment: Bluster and Varieties of Louvain Clulstering
5 weeks ago ATpoint ★ 4.1k
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372
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Comment: Comment: PCA of different bacterial species
7 weeks ago ATpoint ★ 4.1k
2
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251
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
7 weeks ago ATpoint ★ 4.1k
0
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1
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310
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
8 weeks ago ATpoint ★ 4.1k
0
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1
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310
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
8 weeks ago ATpoint ★ 4.1k
1
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304
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
8 weeks ago ATpoint ★ 4.1k
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0
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280
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Comment: Comment: Help with Complex DESeq2 Design
8 weeks ago ATpoint ★ 4.1k
914 results • Page 1 of 19
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