Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
356
views
Comment: Comment: deseq2 results
6 days ago swbarnes2 ★ 1.4k
1
vote
1
reply
356
views
Comment: Comment: deseq2 results
7 days ago swbarnes2 ★ 1.4k
1
vote
0
replies
356
views
Comment: Comment: deseq2 results
8 days ago swbarnes2 ★ 1.4k
0
votes
0
replies
282
views
Answer: Answer: Once again a "Model matrix not full rank"
13 days ago swbarnes2 ★ 1.4k
0
votes
0
replies
380
views
Comment: Comment: DESeq2 output used for PCA plot on R studio
22 days ago swbarnes2 ★ 1.4k
0
votes
2
replies
380
views
Comment: Comment: DESeq2 output used for PCA plot on R studio
22 days ago swbarnes2 ★ 1.4k
0
votes
1
reply
353
views
Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
22 days ago swbarnes2 ★ 1.4k
0
votes
1
reply
380
views
Comment: Comment: DESeq2 output used for PCA plot on R studio
23 days ago swbarnes2 ★ 1.4k
0
votes
1
reply
226
views
Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
4 weeks ago swbarnes2 ★ 1.4k
1
vote
1
reply
211
views
Answer: Answer: Design Matrix within group comparison more than two groups
4 weeks ago swbarnes2 ★ 1.4k
0
votes
0
replies
385
views
Comment: Comment: DESEQ2 Batch Effect
10 weeks ago swbarnes2 ★ 1.4k
1
vote
1
reply
385
views
Answer: Answer: DESEQ2 Batch Effect
10 weeks ago swbarnes2 ★ 1.4k
0
votes
0
replies
382
views
Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
10 weeks ago swbarnes2 ★ 1.4k
0
votes
0
replies
416
views
Answer: Answer: LOG2FC DESEQ2
3 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
587
views
Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
3 months ago swbarnes2 ★ 1.4k
2
votes
0
replies
275
views
Answer: Answer: Comparing one group against multiple groups in DESeq2
3 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
587
views
Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
3 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.3k
views
Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
4 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
587
views
Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
4 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
479
views
Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
5 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
916
views
Comment: Comment: DESeq2 Normalization with 4 Groups
6 months ago swbarnes2 ★ 1.4k
1
vote
0
replies
851
views
Comment: Comment: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
851
views
Answer: Answer: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
906
views
Comment: Comment: DESeq2: Design model includes sex but only one female
7 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
430
views
Comment: Comment: Issues with ddseq2 for treatment response factoring in different KO clones
7 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
437
views
Answer: Answer: DeSeq2 data comparison and extracting outputs
7 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
506
views
Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
7 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
687
views
Comment: Comment: How to use contrast with multiple treatments?
8 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
600
views
Answer: Answer: How to properly compare the group-specific samples using DEseq2
8 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
687
views
Comment: Comment: How to use contrast with multiple treatments?
8 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
917
views
Comment: Comment: Handle zero effective gene length when tximport RSEM results
8 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.6k
views
Comment: Comment: PCA percent variance DESeq2
8 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
708
views
Answer: Answer: DESeq2 batch design
8 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
917
views
Answer: Answer: Handle zero effective gene length when tximport RSEM results
8 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.6k
views
Comment: Comment: PCA percent variance DESeq2
9 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.4k
views
Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
822
views
Comment: Comment: DESeq2 design formula
10 months ago swbarnes2 ★ 1.4k
1
vote
0
replies
664
views
Comment: Comment: DESeq2 on multilevel design variable
11 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
820
views
Comment: Comment: Error: biomaRt has encountered an unexpected server error.
11 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
608
views
Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
11 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
974
views
Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
558
views
Answer: Answer: Accounting for technical replicates in DESeq2
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
513
views
Answer: Answer: DESeq2 design formula
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
921
views
Answer: Answer: Combine RNA-seq
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
694
views
Answer: Answer: How to import dataset from other software into DESeq2?
13 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
456
views
Answer: Answer: DESeq2 statistical model construction
13 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
644
views
Answer: Answer: Compare and filter three BAM files
14 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
531
views
Comment: Comment: DESeq2 with temporal data and different treatments
14 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
786
views
Comment: Comment: How do I design my DESEQ experiment?
14 months ago swbarnes2 ★ 1.4k
442 results • Page 1 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6