Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
3
replies
3.4k
views
Using PEER to identify hidden confounders in RNA-seq data (not working)
PEER RNA-seq differential expression hidden confounders
updated 2.2 years ago by ▴ 30 • written 5.3 years ago by ▴ 30
0
votes
1
reply
1.3k
views
Comment: Comment: Concatenating expression counts from different RNA-seq quantification tools
3.0 years ago rodrigo.duarte88 ▴ 30
4
votes
3
replies
1.3k
views
Concatenating expression counts from different RNA-seq quantification tools
tximport HERVs edgeR DESeq2
updated 3.0 years ago by 42k • written 3.0 years ago by ▴ 30
3
votes
3
replies
1.8k
views
How to run the annotation tool for GARFIELD v2: garfield_annotate_uk10k.sh
garfield awk unix shell embl-ebi
updated 3.2 years ago by • 0 • written 5.2 years ago by ▴ 30
0
votes
0
replies
5.5k
views
Comment: C: WGCNA automatic vs manual network creation
4.5 years ago rodrigo.duarte88 ▴ 30
0
votes
0
replies
66k
views
Comment: C: [DESEQ2] How to access the normalized data of a DESeqDataSet
4.7 years ago rodrigo.duarte88 ▴ 30
1
vote
12
replies
4.7k
views
WGCNA: correlations module-traits, and module membership-gene significance
WGCNA co-expression analysis gene significance module membership module-trait relationship
updated 23 months ago by ▴ 10 • written 4.7 years ago by ▴ 30
0
votes
0
replies
6.0k
views
Comment: C: ComBat with multiple batches
4.7 years ago rodrigo.duarte88 ▴ 30
0
votes
1
reply
6.0k
views
Comment: C: ComBat with multiple batches
4.7 years ago rodrigo.duarte88 ▴ 30
0
votes
1
reply
5.5k
views
Comment: C: WGCNA automatic vs manual network creation
4.7 years ago rodrigo.duarte88 ▴ 30
2
votes
1
reply
1.8k
views
Answer: A: How to run the annotation tool for GARFIELD v2: garfield_annotate_uk10k.sh
5.2 years ago • updated 4.7 years ago rodrigo.duarte88 ▴ 30
0
votes
1
reply
66k
views
Comment: C: [DESEQ2] How to access the normalized data of a DESeqDataSet
4.7 years ago rodrigo.duarte88 ▴ 30
1
vote
0
replies
9.3k
views
Comment: C: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
5.3 years ago rodrigo.duarte88 ▴ 30
0
votes
0
replies
3.4k
views
Comment: C: Using PEER to identify hidden confounders in RNA-seq data (not working)
5.3 years ago rodrigo.duarte88 ▴ 30
0
votes
1
reply
982
views
Comment: C: How to calculate overlap between transposable elements differentially expressed
5.3 years ago rodrigo.duarte88 ▴ 30
2
votes
3
replies
982
views
How to calculate overlap between transposable elements differentially expressed in one experiment, with those expressed in another set of samples?
gene expression enrichment RNA-seq DESeq2
updated 5.3 years ago by 42k • written 5.3 years ago by ▴ 30
0
votes
0
replies
1.6k
views
Comment: C: Handling missing data, DESeq2
5.3 years ago rodrigo.duarte88 ▴ 30
0
votes
0
replies
3.0k
views
Comment: C: Subsetting a tximport object
5.4 years ago rodrigo.duarte88 ▴ 30
1
vote
1
reply
3.0k
views
Comment: C: Subsetting a tximport object
5.4 years ago rodrigo.duarte88 ▴ 30
0
votes
0
replies
743
views
Comment: C: DESeq2 - assessing expression of low count genes
5.5 years ago rodrigo.duarte88 ▴ 30
1
vote
2
replies
743
views
DESeq2 - assessing expression of low count genes
deseq2 HERVs low counts prefiltering dispersion estimates
updated 5.5 years ago by 42k • written 5.5 years ago by ▴ 30
0
votes
1
reply
49k
views
Comment: C: deseq2 filter the low counts
5.5 years ago rodrigo.duarte88 ▴ 30
22 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6