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Answer: Answer: How to correctly adjust for gender in edgeR
1 day ago Gordon Smyth 50k
1
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0
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215
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Comment: Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
2 days ago Gordon Smyth 50k
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1
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215
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Answer: Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
3 days ago Gordon Smyth 50k
1
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1
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247
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Answer: Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
7 days ago Gordon Smyth 50k
2
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0
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304
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Comment: Comment: Log-cpm values from limma
7 days ago • updated 6 days ago Gordon Smyth 50k
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1
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310
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Comment: Comment: Method to find pathways different between 2 groups
9 days ago Gordon Smyth 50k
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1
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310
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Answer: Answer: Method to find pathways different between 2 groups
10 days ago Gordon Smyth 50k
0
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0
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261
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Comment: Comment: package goseq seems to be not available on the latest version of R
11 days ago • updated 10 days ago Gordon Smyth 50k
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0
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395
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
13 days ago Gordon Smyth 50k
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1
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261
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Answer: Answer: package goseq seems to be not available on the latest version of R
13 days ago • updated 12 days ago Gordon Smyth 50k
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0
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172
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Answer: Answer: NEED FOR NESSASORY HELP
14 days ago Gordon Smyth 50k
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152
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Answer: Answer: Gene-by-sample covariates in limma
14 days ago Gordon Smyth 50k
3
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2
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617
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
14 days ago • updated 13 days ago Gordon Smyth 50k
1
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1
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1.3k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
17 days ago Gordon Smyth 50k
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1
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211
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Answer: Answer: Improving the design matrices vignette in RNAseq123
20 days ago Gordon Smyth 50k
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0
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201
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Answer: Answer: Citation for edgeR user guide
23 days ago Gordon Smyth 50k
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1
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187
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
24 days ago Gordon Smyth 50k
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1
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463
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Comment: Comment: FilterByExpr low counts with small sample size
25 days ago Gordon Smyth 50k
1
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1
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1.3k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
26 days ago Gordon Smyth 50k
2
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1
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1.3k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
26 days ago • updated 25 days ago Gordon Smyth 50k
1
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0
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1.3k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
26 days ago Gordon Smyth 50k
0
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1
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236
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Answer: Answer: RNAseq:Technical replicates from different batches
27 days ago Gordon Smyth 50k
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0
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208
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Comment: Comment: Finding DEGs by using edgeR
27 days ago Gordon Smyth 50k
3
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1
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463
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Answer: Answer: FilterByExpr low counts with small sample size
27 days ago Gordon Smyth 50k
0
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1
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145
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Answer: Answer: How to make DGEList and design matrix by edgeR package
27 days ago Gordon Smyth 50k
0
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1
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208
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Answer: Answer: Finding DEGs by using edgeR
27 days ago Gordon Smyth 50k
3
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1
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304
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Answer: Answer: Log-cpm values from limma
27 days ago Gordon Smyth 50k
0
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1
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463
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Comment: Comment: FilterByExpr low counts with small sample size
29 days ago • updated 28 days ago Gordon Smyth 50k
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0
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1.3k
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Comment: Comment: Batch correction and repeated measures
29 days ago Gordon Smyth 50k
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1
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352
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Comment: Comment: Methylation Analysis experiment design using Limma
29 days ago Gordon Smyth 50k
0
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1
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352
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Answer: Answer: Methylation Analysis experiment design using Limma
29 days ago Gordon Smyth 50k
1
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1
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968
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
29 days ago Gordon Smyth 50k
1
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1
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968
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago Gordon Smyth 50k
1
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0
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206
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Answer: Answer: Differentially expressed genes in monocle pseudotime
4 weeks ago Gordon Smyth 50k
0
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0
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365
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Answer: Answer: permutation test in edgeR
4 weeks ago • updated 25 days ago Gordon Smyth 50k
0
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0
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368
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Answer: Answer: Why is my gene not significantly differentially expressed?
4 weeks ago Gordon Smyth 50k
1
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2
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968
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago Gordon Smyth 50k
2
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1
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968
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
4 weeks ago Gordon Smyth 50k
0
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0
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184
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
5 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
1
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0
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
0
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0
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263
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Comment: Comment: Regressing out batch effects
5 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
0
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0
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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461
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago Gordon Smyth 50k
0
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1
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
1
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1
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461
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
6 weeks ago Gordon Smyth 50k
0
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1
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193
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Answer: Answer: edgeR analysis: glm functions and offset matrix
6 weeks ago Gordon Smyth 50k
1
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0
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
2
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1
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985
views
Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
5,094 results • Page 1 of 102
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