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Answer: Answer: More regions in union when increasing DBA$config$mergeOverlap
16 days ago Rory Stark ★ 5.2k
2
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1
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416
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Answer: Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
5 weeks ago Rory Stark ★ 5.2k
0
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0
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2.0k
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Comment: Comment: Subtracting INPUT reads from ChIP read counts.
3 months ago Rory Stark ★ 5.2k
0
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0
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3.0k
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Comment: Comment: Technical details of DiffBind correlation analysis
3 months ago Rory Stark ★ 5.2k
0
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0
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1.9k
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Comment: Comment: DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
5 months ago Rory Stark ★ 5.2k
0
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1
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1.3k
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Answer: Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
7 months ago Rory Stark ★ 5.2k
2
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1
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484
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Answer: Answer: DiffBind dba.analyze function doesn't have bSubControl option anymore?
7 months ago Rory Stark ★ 5.2k
0
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0
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1.2k
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Comment: Comment: DiffBind handling of replicates and consensus
7 months ago Rory Stark ★ 5.2k
1
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1
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1.3k
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Comment: Comment: DiffBind: dba.plotProfile(profiles)
7 months ago Rory Stark ★ 5.2k
1
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1
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656
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Answer: Answer: DiffBind plot.profile y-axis unit and individual locus value on the heatmap
8 months ago Rory Stark ★ 5.2k
0
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0
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508
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Comment: Comment: DiffBind error
8 months ago Rory Stark ★ 5.2k
1
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0
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2.0k
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Answer: Answer: Help with error DiffBind
9 months ago Rory Stark ★ 5.2k
0
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0
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1.2k
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Comment: Comment: DiffBind does not use DESeq2 MLE estimation of fold change
9 months ago Rory Stark ★ 5.2k
0
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0
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2.3k
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Answer: Answer: Question regarding lfcShrink types in DiffBind
9 months ago Rory Stark ★ 5.2k
0
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0
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874
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Answer: Answer: DiffBind dropping peaks in ATAC-seq data
9 months ago Rory Stark ★ 5.2k
0
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0
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3.2k
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Answer: Answer: diffbind
9 months ago Rory Stark ★ 5.2k
0
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0
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671
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Comment: Comment: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
9 months ago Rory Stark ★ 5.2k
0
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1
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671
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Answer: Answer: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
9 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Answer: Answer: DiffBind handling of replicates and consensus
9 months ago Rory Stark ★ 5.2k
0
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2
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3.2k
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Answer: Answer: diffbind
9 months ago Rory Stark ★ 5.2k
1
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1
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708
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Answer: Answer: DiffBind Using edgeR: TMM Normalisation produces identical results to Library Si
10 months ago Rory Stark ★ 5.2k
0
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0
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563
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Answer: Answer: DiffBind output issues
10 months ago Rory Stark ★ 5.2k
1
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1
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820
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Answer: Answer: Interpret plots from DiffBind
10 months ago Rory Stark ★ 5.2k
2
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1
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846
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Comment: Comment: DESeq2 lfcShrink function used in DiffBind package
10 months ago Rory Stark ★ 5.2k
2
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0
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652
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Answer: Answer: Sample sheet file for DiffBind
10 months ago Rory Stark ★ 5.2k
1
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0
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1.9k
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Comment: Comment: Interpret plot from DiffBind
11 months ago Rory Stark ★ 5.2k
1
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1
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1.9k
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Comment: Comment: Interpret plot from DiffBind
11 months ago Rory Stark ★ 5.2k
1
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1
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1.9k
views
Comment: Comment: Interpret plot from DiffBind
11 months ago Rory Stark ★ 5.2k
1
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1
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1.9k
views
Comment: Comment: Interpret plot from DiffBind
11 months ago Rory Stark ★ 5.2k
0
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1
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1.3k
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Answer: Answer: Diffbind "No genome detected"
11 months ago Rory Stark ★ 5.2k
1
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3
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1.9k
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Comment: Comment: Interpret plot from DiffBind
11 months ago Rory Stark ★ 5.2k
3
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1
reply
1.9k
views
Answer: Answer: Interpret plot from DiffBind
11 months ago Rory Stark ★ 5.2k
0
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0
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1.1k
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Comment: Comment: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
11 months ago Rory Stark ★ 5.2k
0
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0
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574
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Answer: Answer: dba.count with pre-defined regions produced only 10% results
11 months ago Rory Stark ★ 5.2k
0
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0
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693
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Answer: Answer: DiffBind dba() in parallel
11 months ago Rory Stark ★ 5.2k
1
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1
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1.1k
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Answer: Answer: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
11 months ago Rory Stark ★ 5.2k
1
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0
replies
808
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Answer: Answer: Getting different differentially accessible peaks between versions
11 months ago Rory Stark ★ 5.2k
0
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1
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1.4k
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Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
12 months ago Rory Stark ★ 5.2k
2
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1
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1.9k
views
Answer: Answer: Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric
12 months ago Rory Stark ★ 5.2k
0
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1
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1.4k
views
Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
12 months ago Rory Stark ★ 5.2k
0
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1
reply
1.4k
views
Answer: Answer: DiffBind - question about showing significant difference on peaks with 0 fold ch
12 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
views
Comment: Comment: DiffBind - question on the use of filtered or unfiltered input data
12 months ago Rory Stark ★ 5.2k
1
vote
1
reply
951
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
13 months ago Rory Stark ★ 5.2k
2
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0
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635
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Answer: Answer: how diffbind count the reads of each peak in each sample?
13 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
views
Answer: Answer: DiffBind - question on the use of filtered or unfiltered input data
13 months ago Rory Stark ★ 5.2k
1
vote
1
reply
951
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
13 months ago Rory Stark ★ 5.2k
2
votes
1
reply
951
views
Answer: Answer: Positive and negative value fold value in ATAC seq using DiffBind
13 months ago Rory Stark ★ 5.2k
0
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0
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528
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Answer: Answer: Plotting read densities from DiffBind results
13 months ago Rory Stark ★ 5.2k
0
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1
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758
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Answer: Answer: Question regarding multiple comparisons in DiffBind
13 months ago Rory Stark ★ 5.2k
1
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0
replies
875
views
Comment: Comment: How to annotate genes from results of DiffBind
13 months ago Rory Stark ★ 5.2k
927 results • Page 1 of 19
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