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227
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Answer: Answer: Numerical differences in DESeq2 output depending on different design matrix cons
11 hours ago Michael Love 42k
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95
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Answer: Answer: DESeq2- Mysterious interaction suppresses DEGs
11 hours ago Michael Love 42k
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108
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Comment: Comment: Assymetric MA plot with no overall trend
3 days ago Michael Love 42k
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248
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Answer: Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
3 days ago Michael Love 42k
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496
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
4 days ago Michael Love 42k
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1
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108
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Answer: Answer: Assymetric MA plot with no overall trend
4 days ago Michael Love 42k
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1
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496
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
4 days ago Michael Love 42k
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1
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233
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Comment: Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
4 days ago Michael Love 42k
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90
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Answer: Answer: normalization across different species for DESeq2 analysis
4 days ago Michael Love 42k
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
4 days ago Michael Love 42k
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1
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496
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Answer: Answer: Can I trust the differential expression analysis when the two groups overlap on
5 days ago Michael Love 42k
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
5 days ago Michael Love 42k
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
8 days ago Michael Love 42k
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
9 days ago Michael Love 42k
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0
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
9 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
10 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
12 days ago Michael Love 42k
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
12 days ago Michael Love 42k
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148
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Answer: Answer: How to save the DEXSeq results
12 days ago Michael Love 42k
2
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0
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142
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Answer: Answer: Trim/Filter out-of-bounds GRanges
12 days ago Michael Love 42k
0
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0
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223
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Comment: Comment: Couldn't connect to server while using "pathways"
12 days ago Michael Love 42k
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
13 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
13 days ago Michael Love 42k
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0
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189
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Answer: Answer: Handling multiple differential expression comparisons
13 days ago Michael Love 42k
1
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0
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254
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Comment: Comment: Too many significant genes when integrating gtex and tcga
15 days ago Michael Love 42k
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0
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163
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Answer: Answer: DESeq2 v1.35.0
16 days ago Michael Love 42k
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0
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302
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Comment: Comment: log2FoldChange value is way too different when compared with counts(dds)
17 days ago Michael Love 42k
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1
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302
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Answer: Answer: log2FoldChange value is way too different when compared with counts(dds)
17 days ago Michael Love 42k
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1
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2.6k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
18 days ago Michael Love 42k
1
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0
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156
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Answer: Answer: Fold change calculation in Diffbind vs. DESEQ2?
18 days ago Michael Love 42k
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1
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169
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Answer: Answer: Timecourse RNASeq analysis
18 days ago Michael Love 42k
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0
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139
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Answer: Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar
18 days ago Michael Love 42k
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227
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Answer: Answer: PCA plot suggestions
22 days ago Michael Love 42k
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253
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Answer: Answer: Deseq2. decontXcounts not integers. Useful alternative?
22 days ago Michael Love 42k
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165
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Answer: Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
24 days ago Michael Love 42k
1
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0
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236
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Comment: Comment: Different Shrunk Log2FC according with reference
24 days ago Michael Love 42k
2
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0
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328
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Answer: Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
24 days ago Michael Love 42k
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1
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2.6k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
25 days ago Michael Love 42k
1
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0
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251
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Comment: Comment: DESeq2 - dispersion estimation when there is none
25 days ago Michael Love 42k
2
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1
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251
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Answer: Answer: DESeq2 - dispersion estimation when there is none
26 days ago Michael Love 42k
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0
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449
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Comment: Comment: DESeq filtering specific to contrasts
29 days ago Michael Love 42k
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0
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794
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Comment: Comment: DESeq2 setting significant p-value
29 days ago Michael Love 42k
0
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1
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449
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Comment: Comment: DESeq filtering specific to contrasts
29 days ago Michael Love 42k
0
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1
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1.7k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
29 days ago Michael Love 42k
0
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1
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2.6k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
29 days ago Michael Love 42k
0
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0
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292
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Comment: Comment: DEG with low counts
29 days ago Michael Love 42k
0
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1
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449
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Comment: Comment: DESeq filtering specific to contrasts
29 days ago Michael Love 42k
0
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0
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158
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Answer: Answer: rlog transformation
4 weeks ago Michael Love 42k
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0
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128
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Answer: Answer: ONT long-read RNA sequencing - data analysis options
4 weeks ago Michael Love 42k
0
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1
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742
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Answer: Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
4 weeks ago Michael Love 42k
7,948 results • Page 1 of 159
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