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11
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Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
1 hour ago
Ken C
• 0
0
votes
0
replies
16
views
Minor alleles giving NA from R biomart getBM?
biomaRt
minoralleledata
grch38
getBM
3 hours ago • updated 2 hours ago
Jeremy.Clark
• 0
0
votes
2
replies
82
views
DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
19 hours ago • updated 16 hours ago
makala
• 0
2
votes
2
replies
270
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
5 days ago • updated 18 hours ago
Matthew Thornton
▴ 360
0
votes
0
replies
33
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determine k during RUVSeq
RUVSeq
RUVnormalize
22 hours ago
Ειρήνη
• 0
2
votes
3
replies
81
views
Problem installing ChAMP on a MacBook
ChAMP
updated 23 hours ago by
shepherl
3.9k • written 1 day ago by
Galia
• 0
0
votes
0
replies
31
views
ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
23 hours ago
Shaimaa Gamal
• 0
2
votes
5
replies
172
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
1 day ago • updated 2 hours ago
Patadù
▴ 10
4
votes
9
replies
215
views
Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2
timecoursedata
GeneExpression
updated 23 hours ago by
ATpoint
★ 4.1k • written 2 days ago by
pangtaihin
• 0
1
vote
2
replies
204
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
3 days ago • updated 16 hours ago
BioinfGuru
▴ 30
0
votes
4
replies
1.2k
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News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 3 hours ago by
angelaesper43
• 0 • written 19 months ago by
Maria Doyle
▴ 70
7
votes
38
replies
5.7k
views
Ensembl plants at annotationHub?
ensembl
ensembldb
plant
arabidopsis thaliana
annotationhub
updated 4 hours ago by
Johannes Rainer
★ 2.0k • written 5.5 years ago by
Guido Hooiveld
★ 4.0k
12 results • Page
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Ken C
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Johannes Rainer
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