Showing : DECIPHER • reset
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DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
DECIPHER
2 days ago • updated 1 day ago makala • 0
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151
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LearnTaxa with custom Silva
DECIPHER LearnTaxa
5 weeks ago Eryn • 0
0
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2
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907
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convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER FASTA disambiguate
written 4.0 years ago by • 0
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3
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748
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DECIPHER IdTaxa: Speed up training?
DECIPHER idtaxa
updated 10 months ago by ▴ 150 • written 10 months ago by ▴ 30
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Error: 'IdClusters'
DECIPHER
updated 11 months ago by ▴ 10 • written 15 months ago by • 0
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385
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Updating 16S training set with LearnTaxa
DECIPHER
17 months ago Connor • 0
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3
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1.1k
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Problem with multiple sequence alignment using AlignSeqs
R dada2 DECIPHER
updated 17 months ago by ▴ 150 • written 17 months ago by • 0
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707
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OligoArrayAux fails to compile
DECIPHER
18 months ago fabian.roger08 ▴ 10
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1.2k
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Issue::DesignPrimers DECIPHER
DECIPHER DesignPrimers
updated 2.7 years ago by • 0 • written 2.7 years ago by • 0
0
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1
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784
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ORF finding in DECIPHER
ORF DECIPHER ORFhunteR
updated 2.9 years ago by ▴ 150 • written 2.9 years ago by • 0
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2.2k
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Do DECIPHER:IdTaxa / dada2::assignTaxonomy work with ambigious reference training set?
decipher dada2
updated 3.0 years ago by ▴ 10 • written 4.3 years ago by • 0
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5
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1.5k
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DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 3.0 years ago by ▴ 150 • written 3.0 years ago by ▴ 10
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0
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971
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DECIPHER Package on dada2 -Implementing Silva_metaxa2 training set from qza file into a fastq.gz/.Rdata
DECIPHER dada2
3.1 years ago anrongloh • 0
0
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1
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855
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Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3.2 years ago by ▴ 150 • written 3.2 years ago by • 0
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5
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1.8k
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Program not properly installed/program not accessible by system
R decipher
updated 3.2 years ago by ▴ 150 • written 4.1 years ago by • 0
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0
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783
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DECIPHER Probe Design Questions
DECIPHER
3.5 years ago henry1995910343 • 0
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800
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insufficient alignment
DECIPHER Alignment
3.5 years ago julius_vn • 0
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3
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1.7k
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DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 3.7 years ago by ▴ 290 • written 3.7 years ago by • 0
1
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6
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1.9k
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Issue with DECIPHER::IdTaxa
DECIPHER IdTaxa
3.7 years ago sebastian.mynott • 0
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2
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931
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how to design probes using decipher
R decipher
4.0 years ago hoonhuiyi • 0
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5
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3.9k
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Error in (function (classes, fdef, mtable)
software error DECIPHER
updated 4.1 years ago by 3.9k • written 4.1 years ago by • 0
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21
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2.9k
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How to use DECIPHER to design group-specific primers
Decipher
4.1 years ago hoonhuiyi • 0
0
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1
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921
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DECIPHER::AlignSeqs fails with a large guide tree
DECIPHER
updated 4.3 years ago by ▴ 150 • written 4.3 years ago by ▴ 10
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1
reply
731
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PCR simulation with PNAs
PCR DECIPHER PNA
4.6 years ago marissaruthlee • 0
1
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2
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1.4k
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Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 4.7 years ago by ▴ 150 • written 4.7 years ago by • 0
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0
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653
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Alignment larger than the maximum allowable size
DECIPHER
updated 4.9 years ago by 3.9k • written 4.9 years ago by • 0
2
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4
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1.7k
views
How to get sequence homology percent from a multiple sequence alignment in DECIPHER?
decipher r protein alignment
6.1 years ago reubenmcgregor88 • 0
2
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2
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1.9k
views
How to combine sequences from different stringsets?
biostrings decipher
updated 6.3 years ago by ★ 6.5k • written 6.3 years ago by • 0
1
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3
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1.2k
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Transform index to chromosome in DECIPHER package
decipher
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by ▴ 40
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7
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1.7k
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Is it possible to do an alignment to a chosen reference sequence in DECIPHER?
R decipher biostrings
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by • 0
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2
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1.1k
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Is it possible to import many .tsr sequence file into R using bio strings for use in DECIPHER?
r biostrings decipher
6.4 years ago reubenmcgregor88 • 0
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5
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1.6k
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Colour a phylogenetic tree, based on column in DECIPHER?
r decipher biostrings
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by • 0
2
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3
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1.8k
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Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher DNA biostrings
updated 6.4 years ago by ▴ 150 • written 6.4 years ago by • 0
0
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1
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1.2k
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DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 6.6 years ago by ▴ 10 • written 6.6 years ago by • 0
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1
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1.6k
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AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
6.6 years ago c.l.frankling • 0
2
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5
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1.9k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
7.0 years ago bbista91 ▴ 10
1
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5
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1.6k
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DECIPHER version bug using biocLite()
DECIPHER
7.9 years ago Vinicius Henrique da Silva ▴ 40
0
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1
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969
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Possible bug in ConsensusSequence
DECIPHER
updated 8.0 years ago by ▴ 10 • written 8.0 years ago by • 0
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3
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2.7k
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mt.teststat
multtest DECIPHER multtest DECIPHER
updated 8.3 years ago by ▴ 20 • written 21.1 years ago by ▴ 220
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0
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1.6k
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Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
10.2 years ago Kathi Zarnack ▴ 110
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1
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1.2k
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 40
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1
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1.8k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 14.0 years ago by ★ 4.3k • written 14.0 years ago by ▴ 40
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0
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1.2k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
14.0 years ago Dick Beyer ★ 1.4k
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1.5k
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
14.1 years ago Radek Blatny ▴ 60
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1.7k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
14.9 years ago Joern Toedling ▴ 450
0
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4
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1.3k
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help with large Rgraphviz output
graph DECIPHER graph DECIPHER
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 890
46 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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