Showing : AnnotationDbi • reset
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7
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1.9k
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ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 15.2 years ago by ▴ 630 • written 15.2 years ago by ▴ 370
0
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5
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2.1k
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Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
9.3 years ago oliver.tills • 0
5
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22
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5.5k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor annotationforge annotationdbi annotation r
updated 7.8 years ago by ★ 1.0k • written 9.3 years ago by • 0
2
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3
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2.7k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 6.6 years ago by • 0 • written 8.6 years ago by • 0
7
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11
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6.4k
views
Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.probes
edgeR limma annotationhub kegga annotationdbi
updated 7.9 years ago by ▴ 20 • written 8.2 years ago by ▴ 20
1
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9
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2.2k
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AnnotationDbi: Select - Join order
AnnotationDbi
5.3 years ago faustfrankenstein • 0
3
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2
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980
views
select With Regular Expression
annotationdbi Wildcard
updated 7.9 years ago by ★ 2.0k • written 7.9 years ago by ★ 1.5k
5
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7
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2.6k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 3.4 years ago by 50k • written 3.4 years ago by • 0
0
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5
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1.5k
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hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
1
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4
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2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
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4
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1.1k
views
<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
4.1 years ago CUCIO199 • 0
4
votes
3
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2.3k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
3.5 years ago Emilia ▴ 30
2
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5
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1.6k
views
building a new annotation
Annotation AnnBuilder AnnotationDbi Annotation AnnBuilder AnnotationDbi
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 10
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2
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1.5k
views
agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
16.1 years ago Georg Otto ▴ 510
3
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5
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1.7k
views
Selecting few ids from reactome.db
annotationdbi reactome.db bug
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 730
0
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3
replies
1.9k
views
How to produce a dataframe with unique ENTREZID to use in gage?
gage annotationdbi entrez ensembl
6.2 years ago colaneri ▴ 30
0
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2
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1.6k
views
Bioconductor Digest, Vol 82, Issue 20
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
updated 14.4 years ago by ▴ 70 • written 14.4 years ago by ▴ 60
1
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2
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11k
views
select() gene in db not working although key exists
annotationdbi org.mm.eg.db org.dm.eg.db select
9.1 years ago Patrick Schorderet ▴ 20
0
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4
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2.3k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 270
19
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6
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35k
views
How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
rnaseq annotationdbi
updated 7.6 years ago by ★ 6.8k • written 7.7 years ago by ▴ 70
0
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3
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4.0k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
7.2 years ago Sidi.Ma • 0
8
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12
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3.9k
views
How to create tx2gene data.frame when there's no TxDb object for the organism you are working with.
tximport deseq2 annotationdbi
updated 6.7 years ago by ★ 2.0k • written 6.7 years ago by • 0
0
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2
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1.4k
views
Help with annotating eset (Affy Arrays)
Biobase annotationdbi affy microarray
8.5 years ago rumroses12 • 0
2
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3
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2.0k
views
Convert Refseq Protein IDs to UniProt IDs
AnnotationDbi
3.4 years ago sgupt46 • 0
3
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3
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2.5k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
3.2 years ago sgupt46 • 0
0
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2
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929
views
Building an annotation data package - not Affymetrix
AnnotationDbi AnnotationDbi
14.8 years ago Lavinia Gordon ▴ 480
1
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2
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3.9k
views
Error attaching org.Hs.eg.db package
annotationdbi annotation organismdb loadnamespace
9.5 years ago milorobertsmith • 0
5
votes
6
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2.5k
views
Is mapId supposed to concatenate multiVals?
annotationdbi ensembldb
updated 7.0 years ago by ★ 2.0k • written 7.0 years ago by ★ 13k
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3
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1.0k
views
gcrma using deprecated package
probe matchprobes AnnotationDbi probe matchprobes AnnotationDbi
14.7 years ago Rullmann, J.A.C. Ton ▴ 40
0
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14
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4.9k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
7.3 years ago • updated 21 months ago Jenny Drnevich ★ 2.0k
0
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4
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3.0k
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topGO annotations issue
topgo annotationdbi
9.3 years ago willmacnair • 0
0
votes
6
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2.3k
views
Missing as.list generic from AnnotationDbi?
annotate AnnotationDbi annotate AnnotationDbi
updated 9.7 years ago by ★ 2.0k • written 10.9 years ago by ★ 7.9k
0
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5
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1.5k
views
problem with Category package and custom annotationDbi
Annotation Category AnnotationDbi Annotation Category AnnotationDbi
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 830
0
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3
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1.2k
views
defining accessors (cols, keys, keytypes, select) for annotation package built with AnnotationForge package
Annotation GO Organism AnnotationDbi Annotation GO Organism AnnotationDbi
10.8 years ago Sashi ▴ 20
0
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2
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1.5k
views
annotationDbi error
AnnotationDbi AnnotationDbi
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 20
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2
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2.1k
views
error in creating custom "org.MeSH.XXX.db" package with MeSHDbi
annotation annotationdbi rsqlite
9.2 years ago Ceca Bojic ▴ 10
5
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7
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1.3k
views
Concatenation of Bimap
AnnotationDbi Concatenate
updated 8.5 years ago by 65k • written 8.5 years ago by ★ 1.5k
0
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2
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1.3k
views
Can't load the arabidopsis.db annotation package created in AnnotationDbi
Annotation AnnotationDbi Annotation AnnotationDbi
15.6 years ago • updated 15.5 years ago Groot, Philip de ▴ 630
1
vote
2
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1.3k
views
SYMBOL is not the official MGI gene symbol?
org.mm.eg.db annotationdbi
updated 5.8 years ago by 65k • written 5.8 years ago by ▴ 20
4
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2
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1.9k
views
mapIds to get GO terms
annotationdbi go.db
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 10
0
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4
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1.0k
views
AnnotationDBI
Annotation GO AnnotationDbi Annotation GO AnnotationDbi
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 50
0
votes
1
reply
1.4k
views
ACCNUM match zero using AnnotationDBI package
GO ChipName AnnBuilder AnnotationDbi GO ChipName AnnBuilder AnnotationDbi
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 120
0
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3
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958
views
The usage of ls("package:hgu95av2.db") shown in AnnotationDbi.pdf
AnnotationDbi AnnotationDbi
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 940
0
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3
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1.5k
views
Error in AnnotationDbi 1.7.8
AnnotationDbi AnnotationDbi
updated 14.8 years ago by ▴ 570 • written 14.8 years ago by ▴ 150
0
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2
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1.4k
views
GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 15.7 years ago by ▴ 220 • written 15.7 years ago by ★ 7.2k
3
votes
4
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1.9k
views
DGE matrix annotation
DGE DESeq2 AnnotationDbi
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
0
votes
2
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1.7k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ▴ 20
0
votes
1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 130
0
votes
1
reply
879
views
How to make a probe package with the GPL1073.probe file from GEO.
cdf probe affy convert AnnotationDbi cdf probe affy convert AnnotationDbi
updated 13.3 years ago by ★ 4.0k • written 13.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
hyperGTest, different Results using different annotation packages
Annotation GO AnnotationDbi Annotation GO AnnotationDbi
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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