Showing : AnnotationDbi • reset
2
votes
17
replies
1.2k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 4 months ago by ▴ 730 • written 4 months ago by ▴ 50
2
votes
4
replies
1.0k
views
Annotation Dbi Error: unable to find an inherited method for function 'x' for signature "MaskedBSgenome"
BSgenome.Hsapiens.UCSC.hg19 AnnotationDbi
7 months ago Erica • 0
2
votes
3
replies
1.7k
views
Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
AnnotationDbi
updated 9 months ago by 66k • written 2.0 years ago by ▴ 40
0
votes
1
reply
559
views
Mapping of probe IDs to gene gene symbols for Affymetrix Human Clariom D Assay platform
GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db
updated 13 months ago by 66k • written 13 months ago by • 0
0
votes
0
replies
561
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
14 months ago ahiser • 0
3
votes
3
replies
5.2k
views
failing to install the package org.Hs.eg.db in R (version 3.5.2 )
org.Hs.eg.db AnnotationDbi
updated 15 months ago by • 0 • written 5.3 years ago by • 0
0
votes
1
reply
858
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 15 months ago by 66k • written 15 months ago by ▴ 50
2
votes
3
replies
1.4k
views
org.Hs.eg.db gives more than one ENTREZID for a gene symbol
org.Hs.eg.db AnnotationDbi
updated 16 months ago by 66k • written 16 months ago by • 0
0
votes
3
replies
770
views
How to handle multiple assay versions in a ChipDb annotation package
ChipDb AnnotationDbi AnnotationForge
updated 16 months ago by 66k • written 16 months ago by • 0
0
votes
1
reply
697
views
Share Annotation Packages
OrgDb AnnotationDbi
updated 19 months ago by 3.9k • written 19 months ago by • 0
2
votes
3
replies
2.3k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 20 months ago by ▴ 120 • written 20 months ago by ▴ 10
0
votes
1
reply
1.2k
views
Error in .testForValidKeys(x, keys, keytype, fks) :
SingleCell AnnotationDbi
updated 21 months ago by 66k • written 21 months ago by • 0
0
votes
14
replies
4.9k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
7.3 years ago • updated 21 months ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
911
views
Bioconducter can not be installed on latest RStudio
AnnotationDbi biomaRt Bioconductor
updated 23 months ago by ★ 6.5k • written 23 months ago by • 0
2
votes
5
replies
1.9k
views
Get corresponding gene id for probe id from Affymetrix array
AnnotationDbi Microarray
2.1 years ago nhaus ▴ 40
0
votes
1
reply
1.5k
views
Converting gene symbols to entrez ID
AnnotationDbi org.Mm.eg.db
updated 2.2 years ago by 66k • written 2.2 years ago by • 0
5
votes
11
replies
1.6k
views
Inconsistent data within org.Sc.sgd.db package
org.Sc.sgd.db AnnotationDbi
updated 2.3 years ago by • 0 • written 4.3 years ago by • 0
0
votes
2
replies
1.5k
views
AnnotationDbi
AnnotationDbi
2.6 years ago Bogdan ▴ 670
3
votes
1
reply
2.2k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 2.7 years ago by 66k • written 2.7 years ago by • 0
1
vote
6
replies
1.9k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 2.7 years ago by • 0 • written 2.7 years ago by ▴ 40
0
votes
3
replies
1.0k
views
Error using old ensembldb annotations with R 4.0 +
anno EnsDb.Hsapiens.v79 ensDb.HSapiens.v92 AnnotationDbi ensembldb
2.8 years ago rbenel ▴ 40
1
vote
2
replies
1.5k
views
Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db.
org.Mm.eg.db AnnotationDbi
updated 2.8 years ago by 66k • written 2.8 years ago by ▴ 30
1
vote
2
replies
1.1k
views
What are these genes ? [How to get Ensembl IDs for them]
AnnotationDbi biomaRt
updated 2.8 years ago by ▴ 30 • written 2.8 years ago by • 0
3
votes
1
reply
1.2k
views
[PrimeView] Affymetrix Human Gene Expression Array
AnnotationDbi [PrimeView]AffymetrixHumanGeneExpressionArray
updated 2.8 years ago by ★ 4.0k • written 2.8 years ago by • 0
1
vote
2
replies
2.7k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 2.9 years ago by 66k • written 2.9 years ago by • 0
0
votes
1
reply
1.2k
views
failing to install the package org.Hs.eg.db in R (version 4.0.5 )
AnnotationDbi org.Hs.eg
updated 3.0 years ago by 66k • written 3.0 years ago by • 0
1
vote
2
replies
1.5k
views
trouble with ENSEMBL ids for Org.Ss.eg.db
Annotation org.Ss.eg.db AnnotationDbi
3.0 years ago carine.genet • 0
6
votes
6
replies
2.3k
views
Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve gene symbols
biomaRt annnotation RNASeq AnnotationDbi
3.0 years ago svlachavas ▴ 830
3
votes
3
replies
2.5k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
3.2 years ago sgupt46 • 0
1
vote
5
replies
1.2k
views
install Annotation Packages BSgenome.Osativa.MSU.MSU7 failed
Oryza_sativa AnnotationDbi
updated 3.2 years ago by 16k • written 3.2 years ago by • 0
0
votes
5
replies
1.1k
views
annotaton hub will not load in R4.04 RStudio3.12
AnnotationDbi
written 3.2 years ago by • 0
3
votes
2
replies
2.6k
views
Mapping Ensemble IDs with version numbers using ensembl annotation packages
AnnotationDbi ensembldb
3.3 years ago Ezgi ▴ 60
13
votes
12
replies
6.8k
views
From a ENST to ENSG
AnnotationDbi
3.3 years ago suxxa ▴ 20
2
votes
3
replies
1.7k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 3.3 years ago by 66k • written 3.3 years ago by ▴ 30
3
votes
2
replies
2.0k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.3 years ago by 25k • written 3.3 years ago by ★ 4.0k
4
votes
2
replies
1.5k
views
ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
AnnotationDbi EnsDb.Hsapiens org.Hs.eg.db
updated 3.4 years ago by ★ 2.0k • written 3.4 years ago by • 0
5
votes
7
replies
2.6k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 3.4 years ago by 50k • written 3.4 years ago by • 0
4
votes
4
replies
2.0k
views
Annotation with org.Hs.eg.db Genome Build 38
AnnotationDbi org.Hs.eg.db
3.5 years ago Bine ▴ 40
2
votes
3
replies
2.1k
views
Convert Refseq Protein IDs to UniProt IDs
AnnotationDbi
3.5 years ago sgupt46 • 0
4
votes
3
replies
2.3k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
3.5 years ago Emilia ▴ 30
0
votes
7
replies
8.5k
views
AnnotationDbi Errors: unable to find an inherited method for function 'select' for signature 'character'.
AnnotationDbi
updated 3.8 years ago by 66k • written 3.8 years ago by • 0
0
votes
4
replies
1.6k
views
Wrong annotation (TSS/TTS) for many genes: keytype="GENEID" with mapIds(TxDb.Mmusculus.UCSC.mm10.knownGene)
AnnotationDbi annotation TxDb.Mmusculus.UCSC.mm10.knownGene
updated 3.9 years ago by 66k • written 3.9 years ago by • 0
4
votes
5
replies
1.9k
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 4.0 years ago by 66k • written 4.1 years ago by • 0
1
vote
5
replies
2.6k
views
Is org.Mm.eg.db updated to mus musculus version 99?
org.Mm.eg.db AnnotationDbi
4.1 years ago kavator ▴ 30
0
votes
1
reply
919
views
After "DBI" and "AnnotationDbi" are installed, the AnnotationDbi dependency package is still not available when "org.hs.eg.db" is installed
org.hs.eg.db AnnotationDbi
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
0
votes
4
replies
1.1k
views
<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
4.2 years ago CUCIO199 • 0
0
votes
2
replies
820
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 4.3 years ago by 66k • written 4.3 years ago by • 0
0
votes
3
replies
1.3k
views
None of the genes or compounds mapped to the pathway!
pathview AnnotationDbi
updated 4.7 years ago by 42k • written 4.7 years ago by • 0
2
votes
3
replies
2.0k
views
tximport::summarizeToGene fails to ignoreTxVersion
tximport tximeta AnnotationDbi
4.9 years ago Benjamin • 0
1
vote
1
reply
1.1k
views
The total genes items (e.g. ENTREZ ID, SYMBOL) in OrgDb (Salmo salar; [["AH66207"]]) is just half the gene number in NCBI ?!
Annotationhub Annotationdb profiler annotationdbi
5.1 years ago wecai • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to run allelic imbalance in apeglm by parayod376 • 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process") by James W. MacDonald 66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
Awards • All
Popular Question to shepherl 3.9k
Popular Question to Guido Hooiveld ★ 4.0k
Popular Question to Chris ▴ 10
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Robert Castelo ★ 3.3k
Locations • All
WEHI, Melbourne, Australia, 12 minutes ago
Canada, 14 minutes ago
United States, 46 minutes ago
The city by the bay, 1 hour ago
Australia, 1 hour ago
Traffic: 451 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6