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BiocFileCache
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reset
6
votes
12
replies
5.2k
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
7 months ago • updated 4 weeks ago
shepherl
3.9k
3
votes
6
replies
1.3k
views
Caching bam index files using BiocFileCache
BiocFileCache
24 months ago • updated 19 months ago
kent.riemondy
▴ 20
2
votes
8
replies
2.5k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.1 years ago by
Martin Morgan
25k • written 2.1 years ago by
ZheFrench
▴ 60
0
votes
1
reply
657
views
Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 2.7 years ago by
Mike Smith
★ 6.5k • written 2.7 years ago by
pierrick.roger
• 0
0
votes
2
replies
1.3k
views
Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta
BiocFileCache
updated 3.1 years ago by
Michael Love
42k • written 3.1 years ago by
judith.risse
• 0
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago
shepherl
3.9k
0
votes
3
replies
716
views
How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 4.2 years ago by
shepherl
3.9k • written 4.2 years ago by
Qiang
▴ 80
7 results • Page
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Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
Wei Shi
★ 3.6k
Your bam file names should be stored in a vector and then provided to the `files` parameter.
Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
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