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ExperimentHub
•
reset
6
votes
12
replies
4.9k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 12 days ago
shepherl
3.9k
0
votes
4
replies
222
views
Storing directories inside an ExperimentHub package?
ExperimentHub
24 days ago • updated 23 days ago
Tim Barry
• 0
0
votes
4
replies
1.4k
views
Cannot connect to ExperimentHub server
ExperimentHub
5 months ago
yanling
• 0
0
votes
1
reply
730
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 13 months ago by
Peter Hickey
▴ 740 • written 13 months ago by
cathalgking
▴ 10
0
votes
3
replies
697
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
21 months ago • updated 20 months ago
sandmann.t
▴ 70
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago
shepherl
3.9k
8
votes
33
replies
3.7k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 3.3 years ago by
friedmanhiccc
▴ 10 • written 3.7 years ago by
richardallenfriedmanbrooklyn
▴ 20
8
votes
16
replies
6.2k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 3.8 years ago by
shepherl
3.9k • written 3.8 years ago by
enricoferrero
▴ 660
2
votes
2
replies
696
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 5.1 years ago by
shepherl
3.9k • written 5.1 years ago by
story.benjamin
▴ 20
4
votes
10
replies
1.8k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
5.6 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
735
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 5.7 years ago by
shepherl
3.9k • written 5.7 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
2.2k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
1.4k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
6.0 years ago
slinker
▴ 20
5
votes
2
replies
1.7k
views
Setting ExperimentHub Cache Location
experimenthub
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Mike Smith
★ 6.5k
5
votes
11
replies
2.6k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 7.4 years ago by
Levi Waldron
★ 1.1k • written 7.4 years ago by
morganx
▴ 10
5
votes
3
replies
1.5k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 7.4 years ago by
Lucas Schiffer
▴ 240 • written 7.5 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.2k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
7.5 years ago
francois.collin
• 0
4
votes
7
replies
1.6k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 7.7 years ago by
Valerie Obenchain
★ 6.8k • written 7.7 years ago by
Michael Love
41k
0
votes
2
replies
1.5k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.8 years ago by
shinx558
• 0
19 results • Page
1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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