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BiocWorkflowTools
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Export sample data to excel after taxonamy assignment
BiocWorkflowTools
3.4 years ago
c.poulton
• 0
0
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0
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626
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Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
4.0 years ago
helucro
▴ 70
2
votes
6
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984
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Multiple problems with BiocWorkflowTools
BiocWorkflowTools
updated 4.2 years ago by
Mike Smith
★ 6.5k • written 4.2 years ago by
alan.ocallaghan
▴ 160
1
vote
4
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1.5k
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Does BiocWorkflowTools package generate F1000Reseach/Bioconductor-stype PDF at once?
workflows
biocworkflowtools
bioconductor
6.0 years ago
Koki
▴ 10
3
votes
1
reply
676
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LaTeX Error with BiocWorkflowTools
biocworkflowtools
updated 6.1 years ago by
Mike Smith
★ 6.5k • written 6.1 years ago by
shbrief
▴ 20
3
votes
2
replies
1.7k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 6.9 years ago by
Andrzej Oleś
▴ 750 • written 6.9 years ago by
Leonardo Collado Torres
★ 1.0k
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Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
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