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biocworkflowtools
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Export sample data to excel after taxonamy assignment
BiocWorkflowTools
3.5 years ago
c.poulton
• 0
0
votes
0
replies
634
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Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
4.0 years ago
helucro
▴ 70
2
votes
6
replies
997
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Multiple problems with BiocWorkflowTools
BiocWorkflowTools
updated 4.3 years ago by
Mike Smith
★ 6.5k • written 4.3 years ago by
alan.ocallaghan
▴ 160
1
vote
4
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1.5k
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Does BiocWorkflowTools package generate F1000Reseach/Bioconductor-stype PDF at once?
workflows
biocworkflowtools
bioconductor
6.0 years ago
Koki
▴ 10
3
votes
1
reply
682
views
LaTeX Error with BiocWorkflowTools
biocworkflowtools
updated 6.1 years ago by
Mike Smith
★ 6.5k • written 6.1 years ago by
shbrief
▴ 20
3
votes
2
replies
1.7k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 7.0 years ago by
Andrzej Oleś
▴ 750 • written 7.0 years ago by
Leonardo Collado Torres
★ 1.1k
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Comment: Deseq2
by
Ram
▴ 210
Cross-posted on biostars: https://www.biostars.org/p/9596031/
Comment: SpliceWiz collateData error
by
giulia.nicoletto.1
• 0
Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…
Answer: Best way to describe DEseq2 design
by
SamGG
▴ 350
Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …
Answer: Deseq2
by
ATpoint
★ 4.2k
Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…
Comment: Counter-directional LFC shrinkage
by
Michael Love
42k
Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…
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Answer: Deseq2
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: When should I correct for batch effects
Answer: When should I correct for batch effects
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