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Bioconductor
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2
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5
replies
214
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
4 days ago • updated 2 days ago
Patadù
▴ 10
1
vote
0
replies
328
views
News:
Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
8 weeks ago • updated 4 days ago
shepherl
3.9k
0
votes
1
reply
113
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 12 days ago by
shepherl
3.9k • written 12 days ago by
cyril.dalmasso
• 0
4
votes
0
replies
143
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
17 days ago
shepherl
3.9k
0
votes
0
replies
94
views
News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
19 days ago
Maria Doyle
▴ 70
1
vote
0
replies
352
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
4 weeks ago • updated 29 days ago
BioinfGuru
▴ 30
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 4 weeks ago
shepherl
3.9k
0
votes
0
replies
103
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
5 weeks ago
shepherl
3.9k
0
votes
7
replies
440
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
7 weeks ago • updated 6 weeks ago
needNGS
• 0
0
votes
2
replies
192
views
bioconductor emailing list
Bioconductor
updated 7 weeks ago by
shepherl
3.9k • written 7 weeks ago by
1427972815
• 0
0
votes
0
replies
163
views
News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
Conference
Bioconductor
8 weeks ago
Maria Doyle
▴ 70
1
vote
2
replies
279
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
10 weeks ago
thomas
• 0
1
vote
0
replies
293
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
12 weeks ago • updated 10 weeks ago
shepherl
3.9k
0
votes
1
reply
330
views
News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 8 weeks ago by
howell
• 0 • written 12 weeks ago by
Maria Doyle
▴ 70
0
votes
0
replies
199
views
News:
BioC2024 registration is now open!
BioC2024
Conference
Bioconductor
Community
11 weeks ago
Maria Doyle
▴ 70
6
votes
11
replies
1.1k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago
gernophil
• 0
0
votes
0
replies
192
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
3 months ago
Maria Doyle
▴ 70
2
votes
0
replies
256
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
3 months ago
Maria Doyle
▴ 70
0
votes
1
reply
267
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 3 months ago by
Lluís Revilla Sancho
▴ 730 • written 3 months ago by
vanbelj
▴ 30
1
vote
5
replies
518
views
Can't post a question containing code?
Bioconductor
updated 8 days ago by
NATASHA
• 0 • written 3 months ago by
DS
▴ 10
0
votes
1
reply
217
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment
datalimit
Bioconductor
updated 3 months ago by
Hervé Pagès
16k • written 3 months ago by
Xin Wang
• 0
0
votes
0
replies
274
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
3 months ago
shepherl
3.9k
2
votes
1
reply
295
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 3 months ago by
Lori
• 0 • written 4 months ago by
shepherl
3.9k
2
votes
2
replies
332
views
How to contact Bioconductor's test host?
Bioconductor
updated 4 months ago by
Hervé Pagès
16k • written 4 months ago by
Marek Gierlinski
▴ 30
0
votes
4
replies
811
views
Bioconductor installation
Bioconductor
written 4 months ago by
Akhil
• 0
4
votes
3
replies
356
views
Bioconductor code browser time out
Bioconductor
updated 4 months ago by
Mike Smith
★ 6.5k • written 4 months ago by
Marek Gierlinski
▴ 30
3
votes
1
reply
341
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 4 months ago by
shepherl
3.9k
0
votes
0
replies
291
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
5 months ago
info
▴ 10
0
votes
3
replies
1.7k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.2 years ago by
tanya
• 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.3 years ago by
chandlerjd58
▴ 10
5
votes
1
reply
464
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.9k
0
votes
0
replies
262
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
5 months ago
Joshua
• 0
0
votes
6
replies
2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 6 months ago by
ATpoint
★ 4.1k • written 17 months ago by
laujihen
• 0
2
votes
0
replies
502
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
6 months ago
Maria Doyle
▴ 70
0
votes
0
replies
310
views
News:
CRAN downtime
BiocManager
Bioconductor
6 months ago
shepherl
3.9k
2
votes
4
replies
667
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 6 months ago by
shepherl
3.9k • written 6 months ago by
lavanilla44
• 0
0
votes
2
replies
819
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
written 8 months ago by
Gordon Smyth
50k
0
votes
3
replies
582
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor
BiocPkgTools
6 months ago
blessybo
• 0
0
votes
1
reply
361
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 6 months ago by
shepherl
3.9k • written 6 months ago by
Marek Gierlinski
▴ 30
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 6 months ago by
shepherl
3.9k • written 20 months ago by
Florian Finkernagel
▴ 30
0
votes
0
replies
380
views
News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
PackageTypeData
PackageType
7 months ago
info
▴ 10
2
votes
1
reply
879
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
ningyuan
• 0
2
votes
11
replies
972
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by
Guido Hooiveld
★ 4.0k • written 7 months ago by
cinzia.spagnoli
• 0
5
votes
2
replies
796
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
7 months ago
Federico
▴ 10
0
votes
2
replies
683
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
nilanjanamani88
• 0
0
votes
2
replies
1.2k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by
Manuel
• 0 • written 8 months ago by
xlu.cpu
• 0
0
votes
1
reply
3.7k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Aytaç
• 0
0
votes
2
replies
982
views
MACS2 not installing
Bioconductor
8 months ago
alia.sinqua
• 0
0
votes
0
replies
651
views
NAs in tabular output from DNAcopy
Bioconductor
DNAcopy
8 months ago
NewtoBioconductor
• 0
1
vote
4
replies
793
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
9 months ago
patrick.turko
• 0
50 results • Page
1 of 1
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Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
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Dario Strbenac
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Vincent J. Carey, Jr.
6.7k
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▴ 180
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3.9k
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