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Showing :
CAMERA
•
reset
4
votes
5
replies
335
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
14 days ago • updated 5 days ago
Chris
▴ 10
3
votes
4
replies
266
views
Help with error using camera() in limma
CAMERA
limma
20 days ago • updated 19 days ago
Chris
▴ 10
1
vote
3
replies
391
views
CAMERA + Gene Ontology Gene Sets
GO
limma
CAMERA
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
Tyler Sagendorf
▴ 10
1
vote
3
replies
667
views
Can CAMERA analyze just one particular pathway
pathway
ORA
limma
CAMERA
DGE
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
manuelsokolov
• 0
0
votes
3
replies
634
views
Battery gene sets for CAMERA limma
CAMERA
updated 14 months ago by
James W. MacDonald
65k • written 14 months ago by
brov.olia
• 0
2
votes
2
replies
817
views
how to make a group to apply the data to CAMERA
CAMERA
2.0 years ago • updated 24 months ago
Akira
• 0
4
votes
9
replies
1.9k
views
HELP! Troubleshooting Installing EBImage Package
Install
CAMERA
insta
PackageType
updated 3.5 years ago by
Andrzej Oleś
▴ 750 • written 3.5 years ago by
Christopher
• 0
0
votes
0
replies
636
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast
camera
gene set testing
3.6 years ago
svlachavas
▴ 830
4
votes
11
replies
2.0k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 4.4 years ago by
Robert Castelo
★ 3.3k • written 4.4 years ago by
Jeremy Beales
▴ 10
0
votes
2
replies
1.5k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera
limma
gene set analysis
gene set enrichment
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
emeline.perthame
• 0
10
votes
2
replies
2.9k
views
How barcode-plot enrichment is calculated?
limma
barcodeplot
camera
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
Eddie Imada
• 0
7
votes
2
replies
1.4k
views
Pre-ranked camera gene set testing with edgeR results
limma
camera
cameraPR
edgeR
gene set testing
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
jamie.gearing
▴ 60
0
votes
0
replies
1.1k
views
CAMERA error - isotopeProportionFits
camera
metabolomics
6.3 years ago
bhgyu
▴ 30
1
vote
2
replies
1.5k
views
Package won't recognise raw data files
camera
metabolomics
r
6.5 years ago
bhgyu
▴ 30
0
votes
1
reply
1.4k
views
limma: Camera() about the input data
limma
camera
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
django_w
• 0
3
votes
1
reply
1.2k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma
camera
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
sarah.williams1
▴ 40
0
votes
1
reply
1.3k
views
LIMMA Camera missing IDs.
limma
camera
updated 6.8 years ago by
Gordon Smyth
50k • written 6.8 years ago by
dangh
• 0
0
votes
6
replies
1.9k
views
Different results obtained from mroast and camera from Deseq2 counts
limma
camera
mroast
tximport
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
jarod_v6@libero.it
▴ 40
1
vote
0
replies
1.1k
views
Meta Analysis on CAMERA results
limma
camera
cohen d
meta analysis
7.2 years ago
Andy91
▴ 60
0
votes
7
replies
2.4k
views
Camera gene set interpretation
limma
camera
gene set analysis
gene set enrichment
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
natalia.pietrosemoli
• 0
3
votes
2
replies
1.2k
views
how to deal with technical replicates in limma camera
limma
camera
updated 7.5 years ago by
Gordon Smyth
50k • written 7.5 years ago by
Yury Bukhman
▴ 20
0
votes
2
replies
1.5k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma
proteomics
camera
mroast
romer
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
natalia.pietrosemoli
• 0
0
votes
3
replies
1.9k
views
limma camera function Multiple contrasts
limma
microarray
contrast
camera
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
gaby8638
▴ 20
1
vote
3
replies
1.9k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS
xcmx
CAMERA
updated 7.7 years ago by
ron.wehrens
▴ 20 • written 7.7 years ago by
lucie.conchou
• 0
3
votes
7
replies
1.7k
views
major camera change from limma 3.22 to 3.28?
limma
camera
updated 7.7 years ago by
Gordon Smyth
50k • written 7.8 years ago by
mski
▴ 10
3
votes
4
replies
1.6k
views
Competitive gene set testing between two sets of genes
gene set testing
camera
edger
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
le2336
▴ 20
2
votes
4
replies
1.7k
views
Getting gene ID's from camera results
limma
camera
updated 8.0 years ago by
phil.chapman
▴ 150 • written 8.0 years ago by
AB
▴ 110
1
vote
5
replies
2.1k
views
Confused by results from CAMERA gene set testing
limma
camera
gene set testing
8.1 years ago
claire.n.levy
▴ 10
2
votes
4
replies
3.0k
views
Arguments for camera (gene set analysis)
camera
GSEA
updated 8.2 years ago by
Steve Lianoglou
★ 13k • written 8.2 years ago by
claire.n.levy
▴ 10
3
votes
4
replies
1.9k
views
Random effects with limma's camera()
limma
camera
duplicatecorrelation
updated 8.3 years ago by
Gordon Smyth
50k • written 8.3 years ago by
Stephen Hoang
▴ 30
8
votes
4
replies
5.6k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma
edger
mroast
romer
camera
updated 8.3 years ago by
Steve Lianoglou
★ 13k • written 8.3 years ago by
maltethodberg
▴ 180
0
votes
1
reply
1.2k
views
romer implementation in edgeR
edgeR
CAMERA
edgeR
CAMERA
updated 8.3 years ago by
Gordon Smyth
50k • written 10.9 years ago by
Julie Leonard
▴ 110
4
votes
12
replies
2.4k
views
Limma Camera error
limma
camera
8.6 years ago
ea1402
▴ 20
5
votes
2
replies
2.1k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2
edger
limma
romer
camera
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
phil.chapman
▴ 150
10
votes
9
replies
6.5k
views
CAMERA error: $ operator not defined for this S4 class
software error
CAMERA
updated 8.9 years ago by
ckuhl
▴ 20 • written 8.9 years ago by
scott.walmsley
▴ 60
8
votes
4
replies
1.7k
views
NaN results on some pathways in CAMERA
camera
edger
pathway analysis
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
Ryan C. Thompson
★ 7.9k
3
votes
4
replies
5.2k
views
Gene set analysis with CAMERA
limma
gene set analysis
camera
updated 9.1 years ago by
Gordon Smyth
50k • written 9.6 years ago by
krishna312
• 0
0
votes
1
reply
2.6k
views
CAMERA limma package. Gene set analysis.
limma
camera
updated 9.1 years ago by
Gordon Smyth
50k • written 9.1 years ago by
udontknowmyiddou
• 0
0
votes
2
replies
1.3k
views
Using camera on a filtered expression matrix
camera
limma
gene set analysis
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
giovanni.dario
• 0
0
votes
3
replies
1.4k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA
CAMERA
updated 9.8 years ago by
Steve Lianoglou
★ 13k • written 9.8 years ago by
Guest User
★ 13k
0
votes
0
replies
2.0k
views
IdeogramTrack and bigWig file errors in Gviz
GO
Network
rtracklayer
CAMERA
Gviz
GO
Network
rtracklayer
CAMERA
Gviz
10.1 years ago
Robert Ivanek
▴ 730
0
votes
0
replies
1.1k
views
CAMERA output to Neutral Monoisotopic Mass
convert
CAMERA
convert
CAMERA
10.4 years ago
Charles Determan Jr
▴ 140
0
votes
0
replies
1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray
limma
Category
CAMERA
GSVA
Microarray
limma
Category
CAMERA
GSVA
10.6 years ago
Gordon Smyth
50k
0
votes
0
replies
1.2k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray
Proteomics
limma
Category
CAMERA
GSVA
Microarray
Proteomics
limma
Category
10.6 years ago
Pekka Kohonen
▴ 190
0
votes
1
reply
1.5k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
Network
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
Network
rtracklayer
Gviz
updated 10.6 years ago by
Michael Lawrence
★ 11k • written 10.6 years ago by
Miles Pufall
▴ 40
0
votes
2
replies
1.9k
views
romer implementation in edgeR
limma
edgeR
CAMERA
limma
edgeR
CAMERA
updated 10.9 years ago by
Gordon Smyth
50k • written 10.9 years ago by
Pekka Kohonen
▴ 190
0
votes
2
replies
1.4k
views
IdeogramTrack and bigWig file errors in Gviz
Network
rtracklayer
CAMERA
Gviz
Network
rtracklayer
CAMERA
Gviz
11.1 years ago
Michael Lawrence
★ 11k
0
votes
6
replies
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
updated 11.1 years ago by
Robert Ivanek
▴ 730 • written 11.1 years ago by
Guest User
★ 13k
0
votes
3
replies
2.2k
views
CAMERA for non-directional gene sets
GO
limma
CAMERA
GO
limma
CAMERA
updated 11.7 years ago by
Wu, Di
▴ 120 • written 11.7 years ago by
Simon de Bernard
▴ 20
0
votes
0
replies
1.2k
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010)
Proteomics
CAMERA
Proteomics
CAMERA
14.0 years ago
Amandeep Sidhu
▴ 20
50 results • Page
1 of 1
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Answer: ERROR; return code from pthread_create() is 22
by
James W. MacDonald
65k
Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
Answer: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
by
James W. MacDonald
65k
It appears that batch is orthogonal to the treatment, so you can just fit a batch effect in your model.
Answer: Control group between 2 batches have different expression in RNAseq data
by
James W. MacDonald
65k
Since batch is orthogonal to the treatment, you just add a batch factor to your model.
Answer: Subsetting RNAseq data | voomaByGroup()
by
Anna
• 0
Hi Gordon. Thank you so much. Your reply is extremely helpful, and I feel more confident moving forward with the analysis. Also, very inte…
Votes
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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