Showing : software error • reset
1
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3
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3.1k
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maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error maftools tcgabiolinks
updated 7 weeks ago by ▴ 20 • written 6.6 years ago by ▴ 100
0
votes
2
replies
1.6k
views
Error in validObject(.Object) : invalid class "CompressedGRangesList" object
software error
updated 2.1 years ago by • 0 • written 4.5 years ago by • 0
8
votes
8
replies
2.6k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 2.6 years ago by ▴ 290 • written 3.8 years ago by ▴ 40
2
votes
8
replies
2.2k
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt software error
updated 2.8 years ago by ★ 6.5k • written 3.9 years ago by • 0
0
votes
4
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5.9k
views
cannot open fasta file, Error in .Call2("new_input_filexp", filepath, PACKAGE = "XVector")
software error
updated 3.0 years ago by • 0 • written 4.1 years ago by • 0
0
votes
2
replies
790
views
DepMap copy number
software error depmap
updated 3.1 years ago by • 0 • written 3.6 years ago by • 0
3
votes
3
replies
20k
views
Unable to install nloptr
software error
updated 3.1 years ago by ▴ 10 • written 3.6 years ago by • 0
1
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2
replies
1.0k
views
How to load the new dataset and gene-sets into singscore package in R
software error
updated 3.3 years ago by • 0 • written 4.5 years ago by • 0
3
votes
4
replies
3.8k
views
ComplexHeatmap installation Error
software error
updated 3.5 years ago by 65k • written 7.1 years ago by ▴ 10
0
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3
replies
1.5k
views
Error in Forge the target package (BSgenome)
software error BSgenome
3.7 years ago • updated 3.5 years ago jiazhou0116 • 0
0
votes
4
replies
2.5k
views
Cannot properly finish biomaRt query
software error annotation biomart
updated 3.5 years ago by • 0 • written 3.9 years ago by ▴ 30
0
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2
replies
1.8k
views
Error during installation of GEOquery package (R 4.0.3, Bioconduct 3.11)
software error GEOquery
updated 3.6 years ago by 1.6k • written 3.6 years ago by • 0
0
votes
0
replies
778
views
flowCore: gives a "emptyValue" error when / is used as an escape character in .fcs file metadata
software error
3.6 years ago andrea.mcewan • 0
0
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1
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1.5k
views
Error: Unable to establish connection with R session
software error
updated 3.6 years ago by 1.6k • written 3.6 years ago by • 0
4
votes
5
replies
2.1k
views
how to get exons of multiple genes
software error
3.6 years ago pegah.taklifi ▴ 30
0
votes
4
replies
1.6k
views
Error in GSVA: Error in dimnames(x) <- dn
software error
3.6 years ago ElaM • 0
0
votes
4
replies
1.2k
views
Viper error while creating Regulon object from minet adjacency matrix file ?
software error
updated 20 months ago by • 0 • written 3.6 years ago by • 0
0
votes
1
reply
802
views
Vignette Run Time
software error
updated 3.6 years ago by 25k • written 3.6 years ago by ▴ 10
3
votes
2
replies
1.7k
views
Failed to install 'MetaboAnalystR' from GitHub
software error MetaboAnalystR mzR
updated 3.6 years ago by 1.6k • written 3.6 years ago by • 0
0
votes
0
replies
681
views
vcountPDict Out-of-Memory Errors
software error Biostrings
3.6 years ago jennyl.smith12 • 0
1
vote
1
reply
977
views
About generating a seed file (DCF format) for forging a BSgenome
software error BSgenome
updated 3.6 years ago by 16k • written 3.7 years ago by • 0
0
votes
4
replies
3.7k
views
DESeq2 installation in R
software error
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
1
vote
1
reply
1.3k
views
Error with view.molecule.2d function in rcdk
software error rcdk view.molecule.2d ViewMolecule2DTable
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by • 0
0
votes
2
replies
1.4k
views
Error in installing org.Hs.eg.db
software error org.Hs.eg.db win10
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
3
votes
12
replies
2.5k
views
DESeq2 Installation Errors
deseq2 software error
updated 20 months ago by • 0 • written 3.6 years ago by • 0
0
votes
2
replies
1.3k
views
Error in installing ChemmineOB
software error ChemmineOB rand.h macOS
updated 3.6 years ago by • 0 • written 3.6 years ago by • 0
1
vote
2
replies
889
views
error in forgeBSgenomeDataPkg
software error
updated 3.7 years ago by 65k • written 3.7 years ago by • 0
2
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3
replies
1.1k
views
Error in topGO analysis
software error topGO go
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
0
votes
3
replies
1.1k
views
Use xcms but mzR occurs error
software error xcms
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
2
votes
2
replies
1.8k
views
BiocParallel : unable to find an inherited method for function 'bplapply' for signature '"integer", "call"'
software error
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 140
0
votes
4
replies
1.5k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 3.7 years ago by 1.6k • written 3.7 years ago by • 0
7
votes
2
replies
4.5k
views
Help in installing certain pacakges
software error install
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 40
0
votes
3
replies
1.4k
views
Unable to install ffbase
software error
updated 3.8 years ago by 25k • written 3.8 years ago by • 0
5
votes
4
replies
1.9k
views
DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
deseq2 software error
updated 3.8 years ago by 42k • written 3.8 years ago by ▴ 10
1
vote
6
replies
3.2k
views
DEP package: Problems installing on macOS
software error DEP proteomics
updated 3.8 years ago by 1.6k • written 3.8 years ago by • 0
0
votes
0
replies
599
views
Dispersions Error in DEXSEQ
software error
3.8 years ago huck.thornton ▴ 10
0
votes
3
replies
1.3k
views
Cant update old packages
software error packages update
updated 3.8 years ago by 65k • written 3.8 years ago by • 0
4
votes
5
replies
1.4k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2 install software error
3.8 years ago mja18 ▴ 40
0
votes
0
replies
636
views
makeBSseqData problem versions
software error
updated 3.8 years ago by 3.9k • written 3.8 years ago by • 0
0
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0
replies
1.4k
views
In serialize(data, node$con)
software error
3.8 years ago thomas.boegl • 0
1
vote
4
replies
1.4k
views
Question: org.Hs.eg.db can not be downloaded
software error
3.8 years ago liuzhizheng1996 • 0
0
votes
0
replies
634
views
Error in data.frame(ASSIGN = "ASSIGN parameters", version = as.character(utils::packageVersion("ASSIGN")), : arguments imply differing number of …
software error assign
3.8 years ago yueli7 ▴ 20
1
vote
7
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1.3k
views
Question:Error installing BiocManager::install("org.Hs.eg.db") package.
software error
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
6
votes
5
replies
868
views
Security process for Bioconductor
software error
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 30
0
votes
2
replies
22k
views
Installing EnhancedVolcano package in R
microarray software error
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
0
votes
4
replies
3.9k
views
ggplot2 of PCA
software error ggplot2
updated 3.9 years ago by • 0 • written 3.9 years ago by ▴ 20
4
votes
4
replies
6.4k
views
plotPCA in DESeq2
software error deseq2
3.9 years ago yueli7 ▴ 20
5
votes
11
replies
1.6k
views
Rsubread: change in behavior when accepting mixed paired end and single end files
software error Rsubread
updated 3.9 years ago by 50k • written 3.9 years ago by • 0
2
votes
20
replies
2.7k
views
plotPCA in DESeq2
software error deseq2
3.9 years ago yueli7 ▴ 20
2
votes
2
replies
877
views
biomart webservice error when using data from Phytozome
software error go
3.9 years ago e.lopez-cortegano • 0
50 results • Page 1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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