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CellRanger
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0
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253
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Non-empty droplets versus good quality cells
CellRanger
emptyDrops
scRNAseq
10X
8 weeks ago
rocanja
▴ 60
0
votes
0
replies
588
views
Read Cellranger outputs in R, combine as SingleCellExperiment
ReadInR
Cellranger
GEX+Features+VDJ
2.3 years ago
gregoire.destreel
• 0
0
votes
1
reply
990
views
Aberrant number of cells
CellBarcode
DropletUtils
emptyDrops()
Cellranger
scRNAseq
updated 2.0 years ago by
rohitsatyam102
▴ 20 • written 2.3 years ago by
gregoire.destreel
• 0
7
votes
12
replies
7.1k
views
How to identify real cells in 10X RNA-seq ?
single-cell
10X
Cell calling
DropletUtils
cellranger
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
xingxd16
▴ 20
4 results • Page
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Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
Good day ATpoint, Could you pls advise also ehy this error could happened design contains one or more variables with all samples having t…
Comment: How to run allelic imbalance in apeglm
by
euge.eugenio
▴ 20
@mikelove could you help me? Thanks!
Comment: ENCORI or starBase : ceRNA data retrieval using Web API and curl
by
ATpoint
★ 4.1k
This is not related to Bioconductor. Biostars is more suited where you posted already.
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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