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Correlation
•
reset
0
votes
0
replies
61
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
6 days ago
Researcher
• 0
0
votes
1
reply
921
views
Human genes correlation to Bacterial genes
correlation
pearsoncorrelation
rna-seq
differential gene expression
updated 5 months ago by
ATpoint
★ 4.1k • written 6.1 years ago by
saad_k6
• 0
0
votes
2
replies
956
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 5 days ago by
mariakenneth147
• 0 • written 18 months ago by
pharamac
• 0
0
votes
1
reply
1.0k
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub
correlation
eigen
WGCNA
updated 5 months ago by
Vanatta
• 0 • written 2.4 years ago by
mairah.khan
• 0
0
votes
1
reply
845
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq
Correlation
DESeq2
updated 21 months ago by
Michael Love
42k • written 21 months ago by
keshav.prasad.gubbi
• 0
1
vote
1
reply
1.0k
views
spearman correlation
correlation
sperarman
updated 2.6 years ago by
ATpoint
★ 4.1k • written 2.6 years ago by
info@shi
• 0
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 3.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 7.7 years ago by
jol.espinoz
▴ 40
4
votes
1
reply
1.6k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat
edgeR
spearman
correlation
scRNAseq
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
tobias-messmer
▴ 10
0
votes
2
replies
925
views
Correlation plot how to improve?
plot
correlation
4.6 years ago
annkolman78
• 0
4
votes
7
replies
1.3k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2
correlation
5.5 years ago
Cornwell, Adam
▴ 110
0
votes
3
replies
1.2k
views
Coverage profile comparison
Targeted sequencing
correlation
coverage
euclid
clustering
5.6 years ago
faramer86
• 0
0
votes
1
reply
1.0k
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
5.9 years ago
adriana.gallego.02
▴ 20
0
votes
1
reply
1.1k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 6.2 years ago by
Peter Langfelder
★ 3.0k • written 6.2 years ago by
hkarakurt
▴ 20
2
votes
1
reply
857
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.2 years ago by
chris86
▴ 420 • written 6.2 years ago by
Arman Shahrisa
▴ 20
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet
caseControl
Correlation
Plot
updated 7.0 years ago by
vulegom
• 0 • written 7.3 years ago by
DataFanatic
▴ 10
1
vote
2
replies
2.0k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind
heatmap
correlation
updated 7.2 years ago by
Rory Stark
★ 5.2k • written 7.2 years ago by
a.bahraini88
• 0
7
votes
3
replies
3.2k
views
plotting correlation between samples
correlation
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
teresati
▴ 10
4
votes
9
replies
3.3k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.3 years ago by
jol.espinoz
▴ 40
4
votes
4
replies
1.4k
views
Correlation analysis taking into account multiple correlations
edger
rna-seq
correlation
updated 7.7 years ago by
Andrew_McDavid
▴ 270 • written 7.7 years ago by
jhj89
▴ 10
2
votes
7
replies
4.6k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 8.2 years ago by
Peter Langfelder
★ 3.0k • written 8.3 years ago by
shalinisonar13
▴ 20
2
votes
4
replies
2.3k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2
correlation
deseq
linear
updated 8.8 years ago by
Ryan C. Thompson
★ 7.9k • written 8.8 years ago by
matt.arno
• 0
3
votes
3
replies
1.5k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.1 years ago by
Sean Davis
21k • written 9.1 years ago by
Johannes Rainer
★ 2.0k
22 results • Page
1 of 1
Recent ...
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Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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