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Cut&Tag
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Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind
CUT&Tag
5 months ago
Hai
• 0
2
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4
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2.2k
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Normalizing Cut&Tag peak data
Normalization
Peakdata
DiffBind
Cut&Tag
updated 20 months ago by
ATpoint
★ 4.2k • written 20 months ago by
bhandary.8590
▴ 20
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Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
If you say you only want terms that are significant, and a given term is only significant in one comparison, you shouldn't expect to see th…
Comment: SingleR Label.Ont
by
marusya
• 0
good! i like it!
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
Hi James, thank you for your answer. I understand how the pvalue might be significant or not depending on the universe. But I still don't …
Comment: GESA with certain gene list returns no result with human genom, but many result
by
sawa
• 0
Thank you so much! I did not know the rule that human genes are written in upper case and mouse in first letter capitalized format. When I …
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…
Votes
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
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