Showing : DiffBind • reset
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ATACseq rudimentary questions
ATACSeq DiffBind
9 weeks ago • updated 8 weeks ago 4747 • 0
1
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11
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8.0k
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DiffBind - question on the use of filtered or unfiltered input data
DiffBind
written 2.9 years ago by ▴ 10
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1
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374
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DiffBind plot.profile error
BiocParallel DiffBind
written 9 months ago by • 0
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0
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1.2k
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Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq profileplyr DiffBind
9 months ago Muhammad • 0
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0
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456
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I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap mergingpeaks ChIPseq DiffBind
10 months ago atlanta • 0
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4
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2.5k
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DiffBind can't find a DAR
dar ATACSeq DiffBind
10 months ago Mengjun • 0
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0
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308
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DiffBind multi-tissue comparison
DiffBind
11 months ago lryrainche • 0
1
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8
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3.0k
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[ChIP-seq] DESeq2 on counts matrix from union set of called peaks
csaw ChIPseq DESeq2 DiffBind
11 months ago • updated 10 months ago Luca • 0
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0
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433
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DiffBind recommendation on using IgG bams
peakcalling DiffBind
12 months ago Harish • 0
0
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4
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1.5k
views
DiffBind edgeR normalization --- why are the normalization factors all equal to 1?
edgeR DiffBind
updated 12 months ago by • 0 • written 12 months ago by • 0
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1
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525
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building samplesheet and plot profile
DiffBind
13 months ago yf • 0
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5
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1.0k
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Diffbind interpretation of data - fold change
DiffBind
13 months ago Vera • 0
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0
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836
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Diffbind: Cut&Run: E-coli spike-in
Normalization DiffBind
16 months ago kim • 0
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0
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495
views
diffbind covariates
DiffBind ATACSeq
updated 16 months ago by 43k • written 16 months ago by ▴ 220
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2
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1.1k
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DiffBind dba.report discrepancy
DiffBind
16 months ago aelbassiouny • 0
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0
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390
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DiffBind subset replicates
DiffBind
16 months ago Haiping • 0
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0
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764
views
Background normalization of Diffbind dba.normalize
Normalization DiffBind
16 months ago Young Boqin • 0
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0
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587
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Trying to understand basic DiffBind usage
ChIPSeq DiffBind
17 months ago Alejandro • 0
0
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2
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720
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DiffBind for MBD-seq
MBD-seq DiffBind
18 months ago Marianna ▴ 20
0
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1
reply
801
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DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
18 months ago • updated 12 months ago Ian D. ▴ 70
0
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1
reply
689
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
18 months ago mdidish ▴ 10
0
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0
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577
views
DiffBind dba.plotprofile y-axis range
DiffBind
18 months ago Tara • 0
0
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8
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1.5k
views
DiffBind full library size not reliable
DiffBind Reads MACS2 FullLibSize
updated 19 months ago by ★ 5.3k • written 19 months ago by ▴ 20
1
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3
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1.1k
views
Create merged ChIP heatmap across conditions
DiffBind profileplyr
updated 19 months ago by ★ 5.3k • written 19 months ago by • 0
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0
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914
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Blacklist regions on DBA object (diffbind)
DiffBind chipseq
20 months ago gamma.jian ▴ 10
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2
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1.1k
views
Trouble reading samplesheet in with diffbind to create dba
DiffBind DifferentialPeakCalling
20 months ago Mallory • 0
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0
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587
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Difference in Contrast in DiffBind
DiffBind
21 months ago user_bioinfo • 0
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0
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570
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need help with Diffbind multiple groups
DiffBind ChIPSeqData
22 months ago Dinesh • 0
0
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1
reply
1.2k
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 16 months ago by • 0 • written 22 months ago by ▴ 10
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0
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911
views
DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
22 months ago yvonneh • 0
0
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0
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546
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
22 months ago Ian D. ▴ 70
0
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9
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2.1k
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
22 months ago • updated 16 months ago Ian D. ▴ 70
3
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1
reply
1.0k
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 22 months ago by 43k • written 22 months ago by ▴ 10
0
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1
reply
1.7k
views
ATACseq merge peaks
DiffBind
updated 22 months ago by ★ 5.0k • written 22 months ago by • 0
0
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4
replies
1.0k
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
22 months ago lonn • 0
0
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0
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588
views
Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
22 months ago Virangika • 0
2
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2
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1.2k
views
[DiffBind] Obtaining normalization factors
DiffBind
22 months ago Henry ▴ 10
2
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2
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2.1k
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
22 months ago Henry ▴ 10
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0
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700
views
How to extract the coordinate of dba.plotPCA?
DiffBind PCA
23 months ago feather-W • 0
0
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0
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707
views
PCA plot for normalized counts using Diffbind
DiffBind PCAplot
23 months ago Ankit ▴ 20
0
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0
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727
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
23 months ago Pierre Lindenbaum ▴ 10
0
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0
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631
views
Multifactor analysis in DiffBind
DiffBind multifactoranalysis
23 months ago erbrocato • 0
0
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2
replies
1.0k
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
23 months ago Sam ▴ 10
0
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1
reply
877
views
Exact same results in Diffbind with different normalization methods
DiffBind
23 months ago red_bricks ▴ 60
0
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1
reply
1.2k
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
2.1 years ago isaromero8888 • 0
0
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0
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1.1k
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
2.1 years ago Jawahar • 0
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0
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675
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl ChIPSeq DiffBind
2.1 years ago frueher • 0
0
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0
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600
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
2.1 years ago Aswathy • 0
0
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0
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925
views
Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind CUT&Tag
2.2 years ago Hai • 0
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0
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753
views
ATACseq- Counts around TSS plot
DiffBind ATACSeq
2.2 years ago inna.gur • 0
679 results • Page 1 of 14
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Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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