Bioconductor DES

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629

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DESeq2 DES

updated 3.4 years ago by Michael Love 42k • written 3.4 years ago by heikki.sarin ▴ 10

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524

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DESeq2 des

updated 18 months ago by Michael Love 42k • written 18 months ago by Devin • 0

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579

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DES DESIGN

updated 20 months ago by Michael Love 42k • written 20 months ago by mike • 0

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449

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 28 days ago by James W. MacDonald 66k • written 28 days ago by Alexandre • 0

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155

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Des DESeq2

updated 5 weeks ago by hemantcnaik • 0 • written 5 weeks ago by Sahar • 0

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250

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DESeq2 DEs

9 weeks ago feather-W • 0

6 results • Page 1 of 1

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Comment: Volcano plot of scRNA-seq data not "centered" by Michael Love 42k

Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…

Answer: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k

I was talking about the command line version.

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0

I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …

Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res by jovel_juan ▴ 30

enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…

Votes

Answer: Documenting resources in an `ExperimentHub` package?

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

Seurat to SingleCellExperiment Converting error in MAC

Error when converting Seurat to SingleCellExperiment

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