Bioconductor DGEList

Showing : DGEList • reset

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edgeR row.names DGEList

9.3 years ago ccheung • 0

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6.7k

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edger subsetting dgelist

updated 7.8 years ago by Gordon Smyth 50k • written 7.8 years ago by mnaymik ▴ 10

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3.7k

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edger DGEList org.hs.eg.db gene annotation

updated 2.6 years ago by IIart.hubII • 0 • written 6.5 years ago by svlachavas ▴ 830

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3.2k

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DGElist filter edgeR

updated 6.9 years ago by Gordon Smyth 50k • written 6.9 years ago by alakatos ▴ 130

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3.1k

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egder dgelist group rnaseq

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by fawazfebin ▴ 60

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2.5k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 7.8 years ago by Steve Lianoglou ★ 13k • written 7.8 years ago by benedict.ng ▴ 20

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2.2k

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edger dgelist NA egsea

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by belmore • 0

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2.1k

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edgeR summarizedexperiment dgelist

6.1 years ago aljoscha.leusmann • 0

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1.7k

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dgelist edger RnaSeqGeneEdgeRQL

updated 5.8 years ago by Gordon Smyth 50k • written 5.8 years ago by Kevin • 0

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1.7k

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edger DGElist

updated 5.1 years ago by Gordon Smyth 50k • written 5.1 years ago by naser.sadri • 0

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933

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tree bootstrap dgelist plotmds

6.2 years ago Larry K. • 0

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853

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factors edgeR setup DGELIst

updated 3.0 years ago by Gordon Smyth 50k • written 3.0 years ago by Alex • 0

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631

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edgeR Bioconductor Dseq2 dgelist

updated 17 months ago by Gordon Smyth 50k • written 17 months ago by Fiona • 0

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150

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DGEList edgeR

4 weeks ago prity6459 • 0

14 results • Page 1 of 1

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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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