Showing : DNASeq • reset
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Compare DNA sequence pairs and compute lengths and coordinates
DNASeq CNEr
2.4 years ago Md Abrar • 0
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4
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3.1k
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transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.7 years ago HELEN • 0
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695
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Job: Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq RNASeq SingleCell
2.8 years ago camp ▴ 10
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620
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
2.9 years ago koushik • 0
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Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops dnaseq bioinformatics
5.7 years ago Cased • 0
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3
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1.5k
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Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 5.9 years ago by ▴ 540 • written 5.9 years ago by • 0
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1.1k
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How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq pathway analysis protein biomarkers
6.3 years ago emadelhewihy • 0
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1
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1.2k
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why merged paired end reads still have strand infomation?
dnaseq rtracklayer paired-end reads
6.9 years ago zwfanwz678 • 0
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1.1k
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Centipede foot printing export
footprinting centipede atac-seq dnaseq
7.1 years ago rbronste ▴ 60
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1.2k
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any ideas on a workflow for exome seq data analysis with R?
exome dnaseq WES
7.9 years ago arvand.akbari • 0
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Job: Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job jobs rnaseq chipseq dnaseq Job
8.7 years ago Rory Stark ★ 5.2k
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1.3k
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Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings subsetting View dnastring dnaseq
updated 8.7 years ago by 65k • written 8.7 years ago by • 0
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Newbie - Adding Labels to Individual Genes with ggbio?
r ggbio ggplot2 dnaseq genomicranges
updated 8.9 years ago by ▴ 130 • written 8.9 years ago by • 0
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6.2k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.0 years ago by 50k • written 9.0 years ago by ▴ 140
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DEseq2 extended to open chromatin anlaysis: normalization, dispersion fit, and "too many" differences
deseq2 dnaseq
updated 9.7 years ago by 42k • written 9.7 years ago by ▴ 100
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Bioconductor Employment: Statistical Research Associate
DNASeq Cancer DNASeq Cancer
12.5 years ago Martin Morgan 25k
16 results • Page 1 of 1
Recent ...
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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