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GenomicFiles
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.9 years ago
koushik
• 0
2
votes
6
replies
1.3k
views
memory leak when subsampling BAM
GenomicFiles
ShortRead
Rsamtools
3.3 years ago
robmaz77
▴ 20
1
vote
2
replies
757
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
Qiang
▴ 80
3
votes
2
replies
987
views
ranges input for GenomicFiles
genomicfiles
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
Qiang
▴ 80
3
votes
2
replies
1.1k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles
reduceByRange
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
maltethodberg
▴ 180
3
votes
3
replies
1.1k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles
BiocParallel
updated 6.9 years ago by
shepherl
3.9k • written 7.0 years ago by
m.van_iterson
▴ 20
4
votes
2
replies
1.3k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools
genomicalignments
genomicfiles
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
jfiksel
▴ 30
1
vote
1
reply
1.4k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles
rsamtools
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
victoriaccorey
▴ 10
2
votes
2
replies
2.6k
views
How to randomly sample BAM files
rsamtools
genomicalignments
genomicfiles
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Welliton de Souza
▴ 70
0
votes
0
replies
992
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO
Biostrings
rtracklayer
GenomicRanges
BiocParallel
GenomicFiles
9.7 years ago
Dan Tenenbaum
★ 8.2k
10 results • Page
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Answer: Error when running topGO with KS statistic and elim agorithm
by
James W. MacDonald
66k
You'll probably have to figure this out yourself. That error is coming from a non-exported function called `.sigGroups.elim`, which iterate…
Answer: Cluster columns in Pheatmap
by
James W. MacDonald
66k
This support site is meant for helping people with Bioconductor packages, and `pheatmap` isn't one of them, so you should be posting on bio…
Comment: Cluster columns in Pheatmap
by
elefth.pavlos
▴ 40
Hi, You mean to take the average expression of each group per gene and plot only 2 columns with averages?
Answer: Normalisation using clinical traits in RNA seq using DESeq2
by
ATpoint
★ 4.2k
See the vignette, it's a FAQ: https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-st…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Please could you comment on this @rory
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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ATpoint
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