Bioconductor MinfiDataEPIC

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168

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minfi minfiDataEPIC

updated 11 days ago by James W. MacDonald 65k • written 11 days ago by e1271094 • 0

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219

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minfi minfiDataEPIC

10 weeks ago Felix • 0

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349

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minfiDataEPIC minfi

updated 5 months ago by Basti ▴ 780 • written 5 months ago by Ana • 0

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498

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Annotation annotate DifferentialMethylation minfiDataEPIC

updated 7 months ago by Basti ▴ 780 • written 7 months ago by titangerd • 0

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1.7k

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minfiDataEPIC EpicV2

updated 8 months ago by Zuguang Gu ▴ 260 • written 9 months ago by Izabela.ams • 0

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409

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minfiDataEPIC minfi

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by phelankj • 0

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2.5k

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minfiDataEPIC methylationArrayAnalysis

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by rae.alshammari ▴ 10

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559

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methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray

updated 13 months ago by Gordon Smyth 50k • written 13 months ago by Grace • 0

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950

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Quantile noob Normalization minfi minfiDataEPIC

updated 21 months ago by James W. MacDonald 65k • written 21 months ago by mikat • 0

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897

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minfiDataEPIC #SexPrediction minfi

updated 2.6 years ago by Basti ▴ 780 • written 2.6 years ago by nucasa • 0

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2.0k

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minfiData plotsex minfi minfiDataEPIC r

updated 3.2 years ago by suman • 0 • written 3.2 years ago by Bethan • 0

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1.8k

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minfiDataEPIC arrays limma minfi Epigenetics

updated 3.5 years ago by Gordon Smyth 50k • written 3.5 years ago by Jeff ▴ 20

12 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

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