Bioconductor Epigenomics

Showing : Epigenomics • reset

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AnnotationHub Epigenomics BigData RoadMap Project NIH Tutorial

updated 7.1 years ago by vanesa_1230 • 0 • written 9.0 years ago by Sonali Arora ▴ 390

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3.0k

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ChAMP methylationepic epicarray epigenomics

updated 6.7 years ago by rcavalca ▴ 140 • written 6.7 years ago by karthikrpad ▴ 10

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1.8k

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rnaseq single cell bioinformatics R epigenomics Job

8.6 years ago Garry Myers • 0

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1.7k

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sequencing transcription epigenomics visualization infrastructure News

9.0 years ago • updated 8.8 years ago Matthew Ritchie ▴ 1000

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conference transcription epigenomics visualization infrastructure News

7.9 years ago Matthew Ritchie ▴ 1000

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roadmap project annotationhub epigenomics big data

updated 8.1 years ago by Valerie Obenchain ★ 6.8k • written 8.1 years ago by kevin.rue ▴ 350

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microbiome epigenomics bioinformatics analyst NGS Job

6.2 years ago Jenny Drnevich ★ 2.0k

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job bioinformatics microbiome metagenomics epigenomics Job

6.3 years ago Jenny Drnevich ★ 2.0k

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epigenomics RNA methylation RNA dynamics chromatin computational biology Job

6.4 years ago mattia pelizzola ▴ 200

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965

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cancer networks genomics epigenomics Job

4.5 years ago • updated 4.4 years ago marschaefer • 0

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948

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bioinformatician job epigenomics hts Job

5.5 years ago mattia pelizzola ▴ 200

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882

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methylation epigenomics slurm mpi methylmix

updated 3.8 years ago by Kevin Blighe ★ 3.9k • written 3.8 years ago by parra.sev ▴ 20

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Comment: Deseq2 by Ram ▴ 210

Cross-posted on biostars: https://www.biostars.org/p/9596031/

Comment: SpliceWiz collateData error by giulia.nicoletto.1 • 0

Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…

Answer: Best way to describe DEseq2 design by SamGG ▴ 350

Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …

Answer: Deseq2 by ATpoint ★ 4.2k

Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…

Comment: Counter-directional LFC shrinkage by Michael Love 42k

Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…

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Answer: Deseq2

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: When should I correct for batch effects

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Popular Question to Levi Waldron ★ 1.1k

Popular Question to Laure Cougnaud ▴ 20