Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
FPKM
•
reset
3
votes
3
replies
1.3k
views
Differential expression analysis with only FPKM matrix available from total newbie in R
FPKM
RNASeqData
DEAnalysis
limma
8 months ago
Ethan Nguyen
• 0
2
votes
4
replies
1.5k
views
How to get TPM / FPKM after batch correction with DESeq2?
DESeq2
BatchEffect
tpm
fpkm
13 months ago
vk
• 0
0
votes
5
replies
3.6k
views
How to remove batch effect from RNA-seq without count data?
RUVSeq
FPKM
removeBatchEffect
RNA-seq
sva
updated 2.4 years ago by
ATpoint
★ 4.1k • written 3.2 years ago by
Xiaojie Cheng
• 0
1
vote
4
replies
4.4k
views
Conversion from FPKM,RPKM to tpm
DESEQ2
fpkm
rpkm
tpm
2.6 years ago
Sandhiya
• 0
0
votes
1
reply
1.6k
views
Doing differential expression using FPKM , samples don't have replication
dge
fpkm
rna-seq
updated 3.0 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
lkianmehr
• 0
1
vote
4
replies
1.0k
views
tximport abundanceCol parameter not functioning for rsem data
tximport
rsem
transcript abundance
TPM
FPKM
updated 3.5 years ago by
Michael Love
42k • written 3.7 years ago by
m.metsger
• 0
2
votes
5
replies
11k
views
Conversion from counts to FPKM
counts
fpkm
fpkm()
normalization
deseq2
updated 7 months ago by
Hamza
• 0 • written 5.4 years ago by
chiara.facciotto
• 0
9
votes
5
replies
4.3k
views
Finding DE genes from RNA-seq data
edgeR
pvalue
qvalue
fpkm
differential gene expression
updated 5.6 years ago by
Steve Lianoglou
★ 13k • written 5.6 years ago by
Harrisonesmith
• 0
2
votes
4
replies
2.0k
views
why the logFC is different between edgeR,DESeq2 results and fpkm logFC(log2(FPKM_tumor_mean/FPKM_normal_mean)?
deseq2
edger
fpkm
counts
fc
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
ZihaoXing
• 0
1
vote
2
replies
1.2k
views
how to output and get the normalization gene expression data (similar to the FPKM gene expression data) from reads count data by DESeq2 and edgeR?
deseq2
edger
fpkm
counts
TCGA
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
ZihaoXing
• 0
0
votes
1
reply
1.5k
views
TPM and FPKM for lncRNA
GenomicFeatures
TPM
FPKM
lncRNA
6.0 years ago
Ina Hoeschele
▴ 620
4
votes
4
replies
5.5k
views
Best DEG tool for datasets with FPKM counts?
FPKM
6.6 years ago
Nithisha
▴ 10
1
vote
8
replies
3.3k
views
Add avgTxLength to DESeqDataSet
deseq2
fpkm
updated 2.9 years ago by
Michael Love
42k • written 6.8 years ago by
rhart
• 0
1
vote
1
reply
1.2k
views
FPKM normalization questions!
r
fpkm
bioinformatics
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
fromhj304
▴ 10
5
votes
5
replies
2.9k
views
Why the log fold change of some genes returned by edgeR is not compatible with their related FPKM value?
edgeR
logFC
FPKM
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
Sara
▴ 10
5
votes
9
replies
6.0k
views
Voom: need at least two non-NA values to interpolate
limma voom
voom
rsem
fpkm
7.7 years ago
komal.rathi
▴ 120
3
votes
4
replies
2.1k
views
Large differences in sample clustering using cummeRbund (csDendro) and rlog-distance (DESeq2)
deseq2
cummerbund
rlog
fpkm
clustering
8.3 years ago
Jon Bråte
▴ 250
2
votes
8
replies
4.3k
views
How to annotate DESeq2 object with gene size to get FPKMs
deseq2
fpkm
updated 8.8 years ago by
Michael Love
42k • written 8.8 years ago by
ashley.doane
▴ 20
7
votes
4
replies
2.5k
views
Gene expression between two copies of same gene:use counts or RPKM or FPKM?
count
rnaseq
rpkm
fpkm
edgeR
updated 9.1 years ago by
Gordon Smyth
50k • written 9.1 years ago by
thibault.lorin
▴ 10
19 results • Page
1 of 1
Recent ...
Replies
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq?
by
baptiste.bidon
• 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Comment: ChAMP installation issue
by
Tahirah
• 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Awards
• All
Scholar
to
Mike Smith
★ 6.5k
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
bas_work
▴ 30
Popular Question
to
landenshanie
▴ 40
Locations
• All
Sweden,
1 minute ago
United States,
8 minutes ago
Spain,
11 minutes ago
United States,
13 minutes ago
United States,
16 minutes ago
Traffic: 727 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6