Showing : GOSemSim • reset
1
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12
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3.4k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 10
0
votes
9
replies
2.9k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 8.8 years ago by ▴ 10 • written 9.1 years ago by • 0
3
votes
12
replies
2.6k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.2 years ago sergi.picart ▴ 20
8
votes
5
replies
2.4k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 6.3 years ago by • 0 • written 6.3 years ago by ▴ 60
0
votes
4
replies
1.9k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
9.1 years ago cpcantalapiedra • 0
1
vote
2
replies
1.9k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.3 years ago by ★ 1.2k • written 9.3 years ago by ▴ 10
2
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2
replies
1.8k
views
Error: could not find function "godata"
gosemsim
5.9 years ago anton.kratz ▴ 60
0
votes
3
replies
1.8k
views
using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 2.3 years ago by 50k • written 2.3 years ago by ▴ 90
0
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1
reply
1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.0 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.7k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.5 years ago Guangchuang Yu ★ 1.2k
0
votes
2
replies
1.6k
views
Can't install GO.db
GOexpress GO.db GOSemSim
18 months ago Chruut • 0
0
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5
replies
1.5k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by ▴ 10
0
votes
1
reply
1.5k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 10.5 years ago by ★ 1.2k • written 10.5 years ago by ★ 13k
0
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4
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1.5k
views
problem of GOSemSim R package operation geneSim()
gosemsim
8.1 years ago bnembarekmarwa • 0
0
votes
1
reply
1.4k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 11.8 years ago by ★ 1.2k • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.1 years ago by ▴ 730 • written 8.6 years ago by ▴ 10
1
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1
reply
1.3k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
1
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1
reply
1.3k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by • 0
0
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0
replies
1.2k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.7 years ago Guangchuang Yu ★ 1.2k
0
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1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 20
0
votes
2
replies
1.2k
views
(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 5.5 years ago by ★ 1.2k • written 5.5 years ago by • 0
1
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3
replies
1.2k
views
Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
4.8 years ago helenlong1 • 0
0
votes
1
reply
1.2k
views
GO similarity by GOSemSim
gosemsim similarity
5.9 years ago ahatashkar • 0
0
votes
1
reply
1.1k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 12.0 years ago by ★ 8.2k • written 12.0 years ago by ▴ 10
0
votes
1
reply
1.1k
views
is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 3.6 years ago by 6.7k • written 3.6 years ago by • 0
0
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1
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1.0k
views
GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
0
votes
0
replies
1.0k
views
GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
5.5 years ago nooshin ▴ 300
0
votes
1
reply
962
views
Gene similarity by GOSemSim
gosemsim mgenesim
5.4 years ago athirak1986 • 0
0
votes
0
replies
924
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.8 years ago Guest User ★ 13k
0
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1
reply
837
views
Using GoSemSim with other Ontologies
GOSemSim
updated 4.9 years ago by ▴ 730 • written 4.9 years ago by • 0
0
votes
0
replies
702
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.3 years ago Amandeep • 0
1
vote
1
reply
663
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 10
0
votes
1
reply
425
views
GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 10 months ago by ▴ 730 • written 10 months ago by • 0
33 results • Page 1 of 1
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Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Comment: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm by Michael Love 42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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