Showing : GOSemSim • reset
1
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12
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3.4k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 10
3
votes
12
replies
2.6k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.2 years ago sergi.picart ▴ 20
0
votes
9
replies
2.9k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 8.8 years ago by ▴ 10 • written 9.1 years ago by • 0
8
votes
5
replies
2.4k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 6.3 years ago by • 0 • written 6.3 years ago by ▴ 60
0
votes
5
replies
1.5k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by ▴ 10
0
votes
4
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1.5k
views
problem of GOSemSim R package operation geneSim()
gosemsim
8.1 years ago bnembarekmarwa • 0
0
votes
4
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1.9k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
9.1 years ago cpcantalapiedra • 0
0
votes
3
replies
1.8k
views
using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 2.3 years ago by 50k • written 2.3 years ago by ▴ 90
1
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3
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1.2k
views
Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
4.8 years ago helenlong1 • 0
0
votes
2
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1.2k
views
(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 5.5 years ago by ★ 1.2k • written 5.5 years ago by • 0
2
votes
2
replies
1.8k
views
Error: could not find function "godata"
gosemsim
5.9 years ago anton.kratz ▴ 60
1
vote
2
replies
1.9k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.3 years ago by ★ 1.2k • written 9.3 years ago by ▴ 10
0
votes
2
replies
1.6k
views
Can't install GO.db
GOexpress GO.db GOSemSim
18 months ago Chruut • 0
0
votes
1
reply
426
views
GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 10 months ago by ▴ 730 • written 10 months ago by • 0
0
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1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 20
0
votes
1
reply
1.1k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 12.0 years ago by ★ 8.2k • written 12.0 years ago by ▴ 10
0
votes
1
reply
1.4k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 11.8 years ago by ★ 1.2k • written 11.8 years ago by ★ 13k
0
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1
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1.5k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 10.5 years ago by ★ 1.2k • written 10.5 years ago by ★ 13k
0
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1
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1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.1 years ago by ▴ 730 • written 8.6 years ago by ▴ 10
1
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1
reply
1.3k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 8.1 years ago by ★ 1.2k • written 8.1 years ago by • 0
0
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1
reply
1.2k
views
GO similarity by GOSemSim
gosemsim similarity
5.9 years ago ahatashkar • 0
0
votes
1
reply
962
views
Gene similarity by GOSemSim
gosemsim mgenesim
5.4 years ago athirak1986 • 0
0
votes
1
reply
838
views
Using GoSemSim with other Ontologies
GOSemSim
updated 4.9 years ago by ▴ 730 • written 4.9 years ago by • 0
1
vote
1
reply
1.3k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
1
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1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.0 years ago Jenny Drnevich ★ 2.0k
0
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1
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1.0k
views
GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
0
votes
1
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1.1k
views
is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 3.6 years ago by 6.7k • written 3.7 years ago by • 0
1
vote
1
reply
664
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 10
0
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0
replies
1.0k
views
GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
5.5 years ago nooshin ▴ 300
0
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0
replies
1.7k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.5 years ago Guangchuang Yu ★ 1.2k
0
votes
0
replies
702
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.3 years ago Amandeep • 0
0
votes
0
replies
1.2k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.7 years ago Guangchuang Yu ★ 1.2k
0
votes
0
replies
924
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
11.8 years ago Guest User ★ 13k
33 results • Page 1 of 1
Recent ...
Replies
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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