Showing : Go.db • reset
2
votes
5
replies
279
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 28 days ago by 66k • written 4 weeks ago by • 0
2
votes
17
replies
1.1k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 4 months ago by ▴ 730 • written 4 months ago by ▴ 50
0
votes
8
replies
773
views
GOslim missing GO term
GO.db GOslim
5 months ago amanda • 0
0
votes
1
reply
407
views
Which species does GO.db use
GO.db annotationTools
updated 10 months ago by ▴ 730 • written 10 months ago by • 0
0
votes
0
replies
407
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
11 months ago RuBBiT0 ▴ 10
1
vote
0
replies
391
views
Typo in GO.db manual reference
GO.db
13 months ago RuBBiT0 ▴ 10
1
vote
2
replies
937
views
GO.db for Bioconductor 3.17
GO.db devel
15 months ago Amanda D. Clark • 0
0
votes
2
replies
1.6k
views
Can't install GO.db
GOexpress GO.db GOSemSim
18 months ago Chruut • 0
0
votes
1
reply
702
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
1
vote
1
reply
2.0k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
24 months ago Lucía ▴ 10
1
vote
6
replies
1.2k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 2.4 years ago by 66k • written 2.4 years ago by • 0
0
votes
1
reply
2.3k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
2.6 years ago Yang • 0
0
votes
1
reply
935
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 2.6 years ago by 66k • written 2.6 years ago by • 0
1
vote
6
replies
1.9k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 2.7 years ago by • 0 • written 2.7 years ago by ▴ 40
0
votes
1
reply
976
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
2.9 years ago • updated 2.8 years ago jabbar_campbell • 0
2
votes
2
replies
1.0k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.0 years ago decppced • 0
1
vote
2
replies
914
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.2 years ago MOHAMMAD • 0
2
votes
1
reply
933
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.2 years ago by ▴ 780 • written 3.2 years ago by • 0
3
votes
2
replies
2.0k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.3 years ago by 25k • written 3.3 years ago by ★ 4.0k
0
votes
4
replies
1.4k
views
GO.db package can't be installed
install GO.db
updated 3.4 years ago by 25k • written 3.4 years ago by • 0
1
vote
1
reply
1.4k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 3.4 years ago by 66k • written 3.4 years ago by • 0
0
votes
4
replies
1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.6 years ago by 66k • written 3.6 years ago by • 0
0
votes
2
replies
1.4k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 3.8 years ago by 66k • written 3.8 years ago by ★ 2.0k
0
votes
1
reply
1.8k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.0 years ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
1.4k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.0 years ago by 66k • written 4.0 years ago by • 0
0
votes
4
replies
1.4k
views
Error attaching TIN
software error GO.db TIN
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
1
vote
2
replies
735
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.1 years ago by 66k • written 4.1 years ago by • 0
1
vote
4
replies
1.1k
views
Trouble installing package GO.db
GO.db
updated 4.4 years ago by 66k • written 4.4 years ago by • 0
0
votes
1
reply
1.2k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
0
votes
5
replies
4.1k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
2
votes
5
replies
1.0k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.9 years ago by 66k • written 4.9 years ago by • 0
0
votes
5
replies
1.5k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.2 years ago by 66k • written 5.2 years ago by • 0
1
vote
2
replies
1.4k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 5.5 years ago by 25k • written 5.5 years ago by ★ 1.1k
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 5.7 years ago by • 0 • written 5.7 years ago by ▴ 10
1
vote
1
reply
1.1k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 5.8 years ago by 66k • written 5.8 years ago by • 0
2
votes
2
replies
1.4k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
2
votes
2
replies
985
views
Troubles installing GO.db
go.db
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 20
3
votes
8
replies
2.5k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
0
votes
0
replies
1.2k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
6.2 years ago crafy • 0
0
votes
3
replies
1.2k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
6.2 years ago dusan.petrovic • 0
0
votes
1
reply
2.4k
views
GO.db failure to install
software error go.db
6.3 years ago matt.a.bennett25890 • 0
0
votes
1
reply
1.5k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 6.7 years ago by 25k • written 6.7 years ago by • 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.1 years ago by 66k • written 7.1 years ago by • 0
0
votes
3
replies
4.0k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
7.3 years ago Sidi.Ma • 0
0
votes
2
replies
1.5k
views
GO.db will not download
GO.db
7.3 years ago MOD • 0
0
votes
1
reply
1.8k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
1
vote
5
replies
5.4k
views
can not able to install go.db
go.db
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
1
reply
1.1k
views
I cannot install the package GO.db
GO.db
7.5 years ago chisad • 0
50 results • Page 1 of 1
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Answer: Normalisation using clinical traits in RNA seq using DESeq2 by ATpoint ★ 4.2k
See the vignette, it's a FAQ: https://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-st…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Please could you comment on this @rory
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by Wei Shi ★ 3.6k
Your bam file names should be stored in a vector and then provided to the `files` parameter.
Comment: Volcano plot of scRNA-seq data not "centered" by Michael Love 42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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