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HTA2.0
•
reset
0
votes
2
replies
1.1k
views
What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0
microarray
affy
r
3.7 years ago
Marco_aurelio
• 0
2
votes
7
replies
1.3k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy
rna
hta2.0
r
updated 4.0 years ago by
James W. MacDonald
66k • written 4.0 years ago by
Marco_aurelio
• 0
1
vote
2
replies
1.4k
views
Inconsistent results when normalizing HTA2.0 arrays at "level=core"
oligo
HTA2.0
affycoretools
RMA
fitProbeLevelModel
updated 4.9 years ago by
James W. MacDonald
66k • written 4.9 years ago by
Guido Hooiveld
★ 4.0k
4
votes
4
replies
1.2k
views
arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray
hta2.0
arrayqualitymetrics
updated 5.5 years ago by
Mike Smith
★ 6.5k • written 5.5 years ago by
RV
▴ 10
0
votes
5
replies
1.9k
views
Help for Affymetrix HTA 2.0 [transcript (gene) version] annotation
hta2.0
annotation
transcripts
updated 5.7 years ago by
svlachavas
▴ 830 • written 5.7 years ago by
Biomed
• 0
2
votes
8
replies
1.9k
views
Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
microarray
scan.upc
hta2.0
updated 6.4 years ago by
Stephen Piccolo
▴ 590 • written 6.4 years ago by
Lukas__
• 0
1
vote
3
replies
1.4k
views
Use of RMA to get exon-level summaries for HTA 2.0
differential exon usage
exon array analysis
annotation
hta2.0
diffsplice
updated 6.7 years ago by
James W. MacDonald
66k • written 6.7 years ago by
relathman
▴ 20
2
votes
3
replies
1.5k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 6.8 years ago by
James W. MacDonald
66k • written 6.8 years ago by
relathman
▴ 20
2
votes
7
replies
2.8k
views
HTA 2.0 and Transcript level analysis
hta2.0
transcripts
6.8 years ago
giroudpaul
▴ 40
0
votes
0
replies
1.1k
views
segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
affxparser
cdf
hta2.0
6.9 years ago
relathman
▴ 20
0
votes
0
replies
1.3k
views
Putative batch effect assessment and correction for downstream DE analysis with microarray dataset
hta2.0
limma
batch effect
affymetrix microarrays
ComBat
7.1 years ago
svlachavas
▴ 830
2
votes
3
replies
1.6k
views
Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo
hta2.0
affymetrix microarrays
memory problem
updated 7.1 years ago by
James W. MacDonald
66k • written 7.1 years ago by
svlachavas
▴ 830
6
votes
7
replies
3.3k
views
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo
affycoretools
hta2.0
affymetrix
updated 2.0 years ago by
Yang Shi
▴ 10 • written 7.2 years ago by
svlachavas
▴ 830
0
votes
0
replies
906
views
(strange?) memory problem when running fitPLM on a set of HTA 2.0 arrays
affyPLM
fitPLM
hta2.0
7.7 years ago
Guido Hooiveld
★ 4.0k
14 results • Page
1 of 1
Recent ...
Replies
Comment: How to run allelic imbalance in apeglm
by
parayod376
• 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process")
by
James W. MacDonald
66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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★ 4.0k
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