Showing : arrayqualitymetrics • reset
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729
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Problem with ArrayQualityMetrics PCA plot
arrayQualityMetrics
updated 2.4 years ago by ★ 13k • written 2.5 years ago by • 0
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3
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1.9k
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Error arrayQualityMetrics
arrayQualityMetrics
updated 2.6 years ago by ★ 6.5k • written 2.6 years ago by • 0
1
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790
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Is it possible to run arrayQualitymetrics or some similar package on a HTAFeatureSet?
arrayQualityMetrics oligo
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 10
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594
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Use arrayQualityMetrics package normalized cel file the number of samples has been reduced
normalization arrayQualityMetrics
updated 4.7 years ago by 65k • written 4.7 years ago by • 0
1
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3
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2.5k
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Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
7.9 years ago • updated 4.8 years ago Lluís Revilla Sancho ▴ 730
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arrayQualityMetrics with count table of RNA-Seq data - how to make ExpressionSetobject or ExpressionSetIllumina object?
arrayQualityMetrics RNA-Seq ExpressionSetobject ExpressionSetIllumina
4.9 years ago Mabeyer • 0
4
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4
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1.1k
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arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 5.4 years ago by ★ 6.5k • written 5.5 years ago by ▴ 10
2
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1
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1.4k
views
arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 6.4 years ago by ★ 6.5k • written 6.4 years ago by ▴ 30
1
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3
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1.1k
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Error in arrayQualityMetrics
arrayQualityMetrics
updated 6.6 years ago by ★ 6.5k • written 6.6 years ago by • 0
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2
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1.4k
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Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 6.7 years ago by 65k • written 6.7 years ago by • 0
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2
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1.2k
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Bug in cleanUpPhenoData
arrayQualityMetrics
updated 7.5 years ago by ★ 13k • written 7.5 years ago by • 0
10
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10
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3.8k
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arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 7.5 years ago by ▴ 10 • written 8.2 years ago by ▴ 10
2
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0
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1.1k
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Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
7.6 years ago Bouzid.a ▴ 20
0
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2
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1.1k
views
array Quality Metrics
arrayqualitymetrics
updated 7.7 years ago by ★ 13k • written 7.7 years ago by ▴ 20
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5
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1.3k
views
quality control analysis
arrayqualitymetrics
updated 7.7 years ago by 65k • written 7.7 years ago by ▴ 20
6
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11
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3.7k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.9 years ago by ▴ 40 • written 9.4 years ago by ▴ 200
0
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0
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1.2k
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argument "intgroup" is missing in arrayQualityMetrics
arrayQualityMetrics
8.1 years ago 13117882295 • 0
1
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2
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2.5k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.2 years ago by 50k • written 8.2 years ago by • 0
2
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4
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2.3k
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arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 30
1
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1
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1.3k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 10
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3
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1.7k
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Unable to execute java by using the Rscript
arrayqualitymetrics java r
8.9 years ago aaryan • 0
4
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6
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4.5k
views
arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
9.3 years ago rachelwright8 ▴ 10
4
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3
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1.5k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 9.5 years ago by 65k • written 9.5 years ago by • 0
0
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1.2k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
10.0 years ago Wolfgang Huber ★ 13k
0
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4
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1.4k
views
svg error in arrayQualityMetrics
GO arrayQualityMetrics GO arrayQualityMetrics
updated 10.2 years ago by ▴ 750 • written 10.2 years ago by ▴ 300
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1
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1.5k
views
Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics ArrayExpress arrayQualityMetrics ArrayExpress
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ▴ 20
0
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4
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2.5k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ★ 13k
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0
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1.0k
views
maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
10.3 years ago Agnes Paquet ▴ 30
3
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1
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1.9k
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arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 10.5 years ago by 65k • written 10.5 years ago by ▴ 50
0
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1
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1.7k
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arrayQualityMetrics - undefined columns selected
Microarray arrayQualityMetrics Microarray arrayQualityMetrics
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ▴ 50
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3
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1.5k
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arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by ★ 13k
0
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1
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941
views
arrayQualityMetrics: How to observe Hoeffding\'s statistic Da in aqm.maplot object?
arrayQualityMetrics arrayQualityMetrics
updated 10.6 years ago by ★ 13k • written 10.7 years ago by ★ 13k
0
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1
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1.2k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
10.7 years ago cstrato ★ 3.9k
0
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3
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1.4k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 10.8 years ago by ★ 3.9k • written 10.8 years ago by ▴ 40
0
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3
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1.1k
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need help regarding quality assessment of raw data
arrayQualityMetrics arrayQualityMetrics
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 20
0
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2
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1.8k
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arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ▴ 480
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3
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1.3k
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arrayQualityMetrics run as batch-job: unable to start device PNG
arrayQualityMetrics arrayQualityMetrics
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 20
0
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8
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2.4k
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.5 years ago by 65k • written 11.5 years ago by ▴ 290
0
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1
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1.0k
views
missing figure text in arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 90
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4
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1.4k
views
Printing arrayQualityMetrics report
convert arrayQualityMetrics convert arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 280
0
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2
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1.5k
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reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
11.9 years ago Alogmail2@aol.com ▴ 90
0
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1
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1.4k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 11.9 years ago by 50k
0
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0
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1.1k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.0 years ago Daniel Aaen Hansen ▴ 90
0
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0
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1.1k
views
arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
12.1 years ago Wolfgang Huber ★ 13k
0
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0
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1.1k
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DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics Biobase arrayQualityMetrics DESeq Genetics Biobase arrayQualityMetrics DESeq
12.1 years ago Wolfgang Huber ★ 13k
0
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1
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1.1k
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DESeq estimateDispersion options for lower depth miRNA-seq
Genetics arrayQualityMetrics DESeq Genetics arrayQualityMetrics DESeq
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 50
0
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8
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1.7k
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Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
12.2 years ago Rosalind Cutts ▴ 20
0
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1
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1.2k
views
for running arrayQualityMetrics
Preprocessing arrayQualityMetrics Preprocessing arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 4.3k
1
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2
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2.6k
views
arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
12.2 years ago Guest User ★ 13k
0
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6
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1.4k
views
arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 10
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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
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Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
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Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
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Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
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