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MACS2
•
reset
0
votes
0
replies
88
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
15 days ago
yvonneh
• 0
0
votes
2
replies
881
views
ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2
MACS2
18 months ago • updated 17 months ago
vanbelj
▴ 30
0
votes
1
reply
1.8k
views
DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq
SICER2
DiffBind
MACS2
offtopic
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
Yuan Tian
▴ 290
0
votes
2
replies
1.4k
views
DiffBind consensus peak set
DiffBind
MACS2
updated 3.7 years ago by
Rory Stark
★ 5.2k • written 3.8 years ago by
ep15587
• 0
0
votes
2
replies
1.6k
views
DiffBind peaks input file format
DiffBind
macs2
updated 5.2 years ago by
Rory Stark
★ 5.2k • written 5.3 years ago by
Anna
• 0
0
votes
2
replies
964
views
Binding matrix creation DiffBind after MACS2 peak call
diffbind
macs2
updated 6.1 years ago by
Rory Stark
★ 5.2k • written 6.1 years ago by
Lauma R
▴ 10
1
vote
1
reply
2.2k
views
Importing Chip-Seq Peak MACS2 output (.xls) files into DBA object with Diffbind?
diffbind
macs2
chip-seq
6.5 years ago
chunhong.liu07
▴ 10
2
votes
3
replies
9.2k
views
DiffBind for ATAC-seq
atac-seq
diffbind
macs2
macs
peak finding
updated 7.2 years ago by
BioinfGuru
▴ 30 • written 7.7 years ago by
igor
▴ 50
2
votes
4
replies
4.9k
views
diffbind and macs2 output
diffbind
macs2
updated 8.4 years ago by
Gord Brown
▴ 650 • written 8.4 years ago by
tony
▴ 10
9 results • Page
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Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters
by
anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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