Showing : MAST • reset
1
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2
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315
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Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 8 weeks ago by ★ 4.1k • written 9 weeks ago by • 0
0
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0
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248
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Error: grouping factors must have > 1 sampled level
Mast mastR MAST
updated 11 weeks ago by 66k • written 11 weeks ago by • 0
0
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0
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182
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Comparing the effects of a condition over time in two seperate tissues
MAST
12 weeks ago Dillon • 0
0
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1
reply
333
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Mismatch between MAST DE results and expression dot plot
MAST mastR
4 months ago Simon • 0
0
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0
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458
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How to extract P-Values and LogFC from lrTest in MAST?
pvalue logFC lrtest MAST
13 months ago Tadeoye ▴ 20
1
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7
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1.3k
views
Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and another question on controlling for CDR
MAST
14 months ago Ken C • 0
0
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0
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416
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MAST for single cell ATAC data
MAST
14 months ago zuljiamel1991 ▴ 10
1
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2
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1.3k
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Input for MAST
MAST
15 months ago • updated 14 months ago zuljiamel1991 ▴ 10
0
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0
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959
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How to interpret MAST coefficients
DifferentialExpression MAST
19 months ago Ismail • 0
0
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0
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491
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How does MAST caculate log fc
MAST
21 months ago Chenghao • 0
0
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0
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700
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Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST
23 months ago Nik Tuzov ▴ 80
0
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0
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723
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Performing DGE analysis with MAST on a variable with more than 2 levels
MAST DEG SingleCell
2.0 years ago zroger499 • 0
0
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0
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911
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Low logFCs using MAST for scRNA-seq
MAST
2.2 years ago learner_MD • 0
0
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0
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755
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Issues geting meaninfull results for single cell DGE using MAST
MAST SingleCell
2.3 years ago zroger499 • 0
1
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0
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652
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When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
2.8 years ago Dan • 0
0
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1
reply
947
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Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 2.9 years ago by 66k • written 2.9 years ago by • 0
0
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1
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891
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MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 3.0 years ago by • 0 • written 3.3 years ago by • 0
0
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0
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1.1k
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How to do pairwise multiple comparisons in MAST
MAST
3.3 years ago sysumed3615 • 0
0
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2
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1.1k
views
MAST compare two conditions with several donors
MAST
updated 3.3 years ago by • 0 • written 3.5 years ago by • 0
0
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3
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1.5k
views
MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
3.8 years ago TriS ▴ 200
1
vote
3
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1.3k
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comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 4.4 years ago by ▴ 270 • written 4.4 years ago by ▴ 10
0
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1
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1.3k
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About getting DE genes using MAST
MAST
updated 4.4 years ago by ▴ 270 • written 4.4 years ago by • 0
0
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0
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892
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DEG among experimental and control group in MAST
MAST DEG batch effects
4.7 years ago chendianyu • 0
0
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1
reply
1.6k
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Minimum number of cells required for the MAST
MAST scRNAseq differential expression
4.7 years ago Andrew_McDavid ▴ 270
2
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3
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1.2k
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Logistic regression in MAST - question
mast
updated 5.2 years ago by ▴ 270 • written 5.2 years ago by ▴ 80
2
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7
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1.7k
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Estimation of non-trivial contrasts in MAST
mast
updated 5.2 years ago by ▴ 270 • written 5.2 years ago by ▴ 80
0
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1
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1.1k
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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
updated 9 weeks ago by ▴ 20 • written 5.3 years ago by • 0
0
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2
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1.2k
views
Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
5.7 years ago santos22903 • 0
0
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6
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1.4k
views
Error in zlm function model matrix
MAST
6.0 years ago jka8119 ▴ 10
2
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4
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1.9k
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Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 6.1 years ago by ▴ 270 • written 6.1 years ago by ▴ 40
2
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1
reply
2.4k
views
MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 6.1 years ago by ▴ 270 • written 6.1 years ago by ▴ 20
2
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1
reply
1.1k
views
How to load data csv in MAST
mast
6.1 years ago francesco.brundu@gmail.com ▴ 40
0
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4
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1.3k
views
MAST: What does the function gseaAfterBoot do exactly?
MAST
6.2 years ago dfm2129 • 0
0
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8
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1.8k
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MAST - not getting Hurdle p values
MAST
updated 6.2 years ago by ▴ 270 • written 6.2 years ago by ▴ 10
2
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3
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2.1k
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Using MAST with DropSeq data
MAST mast dropseq
updated 6.3 years ago by ▴ 270 • written 6.3 years ago by ▴ 10
4
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3
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2.0k
views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 6.4 years ago by ▴ 270 • written 6.4 years ago by ▴ 100
0
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2
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1.3k
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What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
6.6 years ago alexanderaivazidis • 0
3
votes
3
replies
2.5k
views
How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 6.7 years ago by ▴ 270 • written 6.7 years ago by ▴ 40
4
votes
1
reply
1.8k
views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
6.8 years ago Andrew_McDavid ▴ 270
2
votes
1
reply
4.2k
views
Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 6.8 years ago by ▴ 270 • written 6.8 years ago by • 0
0
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3
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1.4k
views
Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 6.8 years ago by ▴ 270 • written 6.8 years ago by • 0
0
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1
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1.3k
views
Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
7.1 years ago Andrew_McDavid ▴ 270
3
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2
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2.2k
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MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
7.1 years ago shao ▴ 100
43 results • Page 1 of 1
Recent ...
Replies
Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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