Showing : RLE • reset
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deseq2 RLE normalization
RLE normalization deseq2
updated 14 months ago by ★ 4.1k • written 14 months ago by • 0
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858
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Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 3.9 years ago by ★ 28k • written 3.9 years ago by • 0
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1.7k
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RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2 RLE
updated 4.3 years ago by 42k • written 4.3 years ago by • 0
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Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges s4vectors rle rlelist
5.9 years ago endrebak85 ▴ 40
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2
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1.2k
views
Error: invalid class "VRanges" object
variantannotation VRanges R Rle
updated 5.9 years ago by ★ 6.8k • written 5.9 years ago by • 0
1
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1
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3.0k
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What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle deseq2 normalization
updated 6.0 years ago by 42k • written 6.0 years ago by ▴ 20
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1.1k
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Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle Big data coverageByTranscript
6.1 years ago hauken_heyken ▴ 80
7
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4
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1.6k
views
From RleList to RleArray
delayedarray rlelist rle
updated 6.5 years ago by ▴ 740 • written 6.5 years ago by ▴ 950
2
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4
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1.4k
views
Generic functions for DataFrames of Rle objects ?
DataFrame Rle generic expression table
updated 10 months ago by 16k • written 7.0 years ago by ▴ 180
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3
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1.6k
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Efficiently construct GRanges/IRanges from Rle vector
Rle granges iranges
7.6 years ago my4 ▴ 10
0
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1
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1.6k
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Efficient coverage calculation with RleList and GRanges
granges Rle coverage View mean
updated 7.9 years ago by ★ 11k • written 7.9 years ago by ▴ 170
6
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3
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2.4k
views
how does coverage() works
biostrings coverage rle iranges
8.0 years ago likeeatingpizza ▴ 10
0
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1
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1.4k
views
extract RLE normalized table
rle normalization table
updated 8.6 years ago by ★ 13k • written 8.6 years ago by • 0
3
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7
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2.0k
views
Add up RLEs that are in lists?
RLE GenomicFeatures rnaseq
updated 9.1 years ago by 16k • written 9.1 years ago by ▴ 30
2
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6
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2.8k
views
Shrink or Expand RLE
RLE iranges granges coverage
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 30
2
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4
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1.9k
views
summing integer RLE
rle list irange grangeslist
updated 9.1 years ago by ▴ 80 • written 9.1 years ago by ▴ 30
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2
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1.1k
views
Summary statistics of RleListViews object
rle Views
9.2 years ago Sean Davis 21k
2
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5
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1.5k
views
making a RleViewsList object gets slow with many chromosomes
views iranges rle
9.3 years ago Janet Young ▴ 740
1
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2.3k
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Computing NUSE and RLE scores
affyPLM RLE NUSE
updated 9.3 years ago by 21k • written 9.3 years ago by ▴ 10
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2
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1.2k
views
boxplot on an Rle object?
Rle boxplot
9.3 years ago Johannes Rainer ★ 2.0k
20 results • Page 1 of 1
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Comment: Create protein sequences including variants from a VCF file by Yun • 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization? by Daniel • 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Guido Hooiveld ★ 4.0k
FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…
Votes
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Answer: How to design DEXSeq formula for multiple variables
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