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Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
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Hi Sole,
If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object?
I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
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tjl
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0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
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James W. MacDonald
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Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
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3.3k
Hi,
We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
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