Showing : rnaseqGene • reset
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normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 1 day ago by ★ 4.1k • written 1 day ago by • 0
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5
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167
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deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
2 days ago • updated 14 hours ago sajadahmad41454 • 0
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2
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292
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RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 7 weeks ago by 50k • written 8 weeks ago by • 0
3
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5
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641
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DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 9 weeks ago by 42k • written 10 weeks ago by ▴ 10
2
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1
reply
223
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Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 3 months ago by 42k • written 3 months ago by ▴ 20
5
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6
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571
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
3 months ago Shaimaa Gamal • 0
1
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4
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563
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rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 6 months ago by 42k • written 6 months ago by ▴ 60
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827
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R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 10 months ago by 42k • written 10 months ago by • 0
1
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3
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805
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Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 16 months ago by 42k • written 16 months ago by • 0
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1.6k
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Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 18 months ago by 65k • written 18 months ago by • 0
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809
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toptable sort .by set
limma rnaseqGene
24 months ago snowmattin • 0
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1
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874
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Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.3 years ago by ★ 4.1k • written 2.3 years ago by • 0
6
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10
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1.5k
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rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 2.5 years ago by 42k • written 2.5 years ago by ▴ 20
4
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1
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2.0k
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mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 2.5 years ago by 42k • written 2.5 years ago by ▴ 10
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2
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829
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Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.6 years ago • updated 11 months ago diangomaiga • 0
2
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2
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1.7k
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DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
2.9 years ago SUMIT • 0
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0
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743
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display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
3.2 years ago Bogdan ▴ 670
1
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6
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1.4k
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Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
3.2 years ago Seaweed • 0
3
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3
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878
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A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 4.0 years ago by 42k • written 4.0 years ago by ▴ 40
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3
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777
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typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 4.3 years ago by 42k • written 4.3 years ago by ★ 1.5k
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7
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3.0k
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Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
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2
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919
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DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
5.2 years ago courtney.stairs • 0
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2
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1.2k
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how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 5.3 years ago by 65k • written 5.3 years ago by ▴ 10
3
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5
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7.7k
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How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 5.3 years ago by ★ 1.4k • written 5.3 years ago by • 0
1
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3
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1.3k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
5.4 years ago melkile26 • 0
2
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5
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1.6k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 6.1 years ago by 3.9k • written 6.1 years ago by • 0
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2
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1.3k
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Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 6.2 years ago by ▴ 160 • written 6.2 years ago by • 0
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1
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1.8k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 7.9 years ago by ★ 6.8k • written 7.9 years ago by ▴ 20
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4
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1.8k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 7.9 years ago by • 0 • written 8.0 years ago by • 0
2
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5
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3.1k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
8.1 years ago cirisarri95 • 0
0
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1
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2.0k
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Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
0
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6
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3.9k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
8.6 years ago JunLVI ▴ 40
3
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2
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1.8k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
6
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8
replies
2.5k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by • 0
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2
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3.1k
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Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 9.0 years ago by 65k • written 9.0 years ago by • 0
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2
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5.1k
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Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.1 years ago greg.mulhearn • 0
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3
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1.7k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
9.1 years ago Cheng-Yuan Kao ▴ 100
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0
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1.2k
views
Minor error in the RNASeqGene workflow
rnaseqgene
9.2 years ago snf ▴ 10
38 results • Page 1 of 1
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Replies
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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