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RUV
•
reset
1
vote
2
replies
1.4k
views
RUV4 for microarrays
RUV4
RUV
Microarray
3.1 years ago • updated 3.0 years ago
Antonio
• 0
5
votes
6
replies
1.6k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 3.7 years ago by
James W. MacDonald
66k • written 3.7 years ago by
karissa.barthelson
▴ 20
0
votes
1
reply
1.6k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 4.1 years ago by
hermidalc
▴ 20 • written 4.8 years ago by
raf4
▴ 20
0
votes
3
replies
973
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 4.3 years ago by
tmms
• 0 • written 4.3 years ago by
f_pardow
• 0
0
votes
1
reply
1.2k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 4.6 years ago by
Michael Love
42k • written 4.6 years ago by
r.tom
• 0
0
votes
0
replies
924
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.7 years ago
peter.fransquet
• 0
0
votes
0
replies
908
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.0 years ago
RC
• 0
0
votes
0
replies
921
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.1 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
2.6k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.8 years ago by
davide risso
▴ 950 • written 6.8 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.3k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.8 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
923
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
6.9 years ago
manish20072013
• 0
3
votes
4
replies
3.2k
views
Single cells batch effects
RUV
single cell
batch effect
7.2 years ago
ribioinfo
▴ 100
0
votes
0
replies
997
views
Has anyone used the RUV package for Microbiome data?
ruv
7.2 years ago
sasha
• 0
0
votes
1
reply
2.3k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 7.3 years ago by
davide risso
▴ 950 • written 7.4 years ago by
weiwsmiling
• 0
0
votes
0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
7.4 years ago
carleshf
▴ 10
2
votes
1
reply
1.6k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.9 years ago
anthonycolombo60
• 0
0
votes
5
replies
2.3k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
8.8 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.6k
views
normalised data after RUV2( )
ruv
microarray
updated 8.9 years ago by
gthm
▴ 30 • written 9.0 years ago by
Pauly Lin
▴ 150
3
votes
2
replies
2.6k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 9.0 years ago by
davide risso
▴ 950 • written 9.0 years ago by
Pauly Lin
▴ 150
1
vote
9
replies
2.6k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
9.0 years ago
sergio.espeso-gil
• 0
20 results • Page
1 of 1
Recent ...
Replies
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq?
by
baptiste.bidon
• 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Comment: ChAMP installation issue
by
Tahirah
• 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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