Showing : ruv • reset
1
vote
2
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1.4k
views
RUV4 for microarrays
RUV4 RUV Microarray
3.1 years ago • updated 3.0 years ago Antonio • 0
5
votes
6
replies
1.6k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq RUV RNA-seq
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 20
0
votes
1
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1.6k
views
Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 4.1 years ago by ▴ 20 • written 4.8 years ago by ▴ 20
0
votes
3
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971
views
Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 4.2 years ago by • 0 • written 4.3 years ago by • 0
0
votes
1
reply
1.2k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2 ruv batch
updated 4.6 years ago by 42k • written 4.6 years ago by • 0
0
votes
0
replies
920
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
votes
0
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906
views
which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.0 years ago RC • 0
0
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0
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919
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.0 years ago Taub, Margaret ▴ 10
2
votes
9
replies
2.6k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.8 years ago by ▴ 950 • written 6.8 years ago by ▴ 80
1
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3
replies
2.3k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.8 years ago Nik Tuzov ▴ 80
0
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0
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922
views
Differential expressed genes between different samples in RUVseq
rnaseq ruv differential gene expression R
6.9 years ago manish20072013 • 0
3
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4
replies
3.2k
views
Single cells batch effects
RUV single cell batch effect
7.1 years ago ribioinfo ▴ 100
0
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0
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996
views
Has anyone used the RUV package for Microbiome data?
ruv
7.2 years ago sasha • 0
0
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1
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2.3k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq ruvg ruv
updated 7.3 years ago by ▴ 950 • written 7.4 years ago by • 0
0
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0
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1.1k
views
Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
7.4 years ago carleshf ▴ 10
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.9 years ago anthonycolombo60 • 0
0
votes
5
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2.3k
views
RUVseq for microRNAs
ruvseq ruv microrna
8.8 years ago sergio.espeso-gil • 0
0
votes
1
reply
1.6k
views
normalised data after RUV2( )
ruv microarray
updated 8.9 years ago by ▴ 30 • written 9.0 years ago by ▴ 150
3
votes
2
replies
2.6k
views
Normalisation before RUVg and RUV2?
ruvseq ruv
updated 9.0 years ago by ▴ 950 • written 9.0 years ago by ▴ 150
1
vote
9
replies
2.6k
views
RUV: removing unwanted variation in RNA-seq
RUV ruvseq rnaseq
9.0 years ago sergio.espeso-gil • 0
20 results • Page 1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by jane • 0
Your material was totally correct, therefore I was able to learn what I needed to know. I'd want to convey my heartfelt gratitude for shari…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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