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758
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News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
11 weeks ago • updated 26 days ago shepherl 3.9k
1
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8
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1.5k
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News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.2 years ago by 3.9k
0
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8
replies
2.2k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation software software error
updated 7.9 years ago by ★ 4.3k • written 8.0 years ago by ▴ 10
0
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3
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1.0k
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News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 4.1 years ago by ▴ 160 • written 4.1 years ago by 3.9k
0
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5
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1.3k
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News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
2.6 years ago • updated 2.1 years ago shepherl 3.9k
1
vote
2
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1.4k
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News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
3.6 years ago shepherl 3.9k
0
votes
2
replies
1.6k
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News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
4.6 years ago • updated 4.5 years ago shepherl 3.9k
2
votes
2
replies
1.5k
views
News: Final List of Deprecated Packages for Bioc3.13
Workflow Software ExperimentData Deprecation
3.4 years ago • updated 3.0 years ago shepherl 3.9k
2
votes
3
replies
2.8k
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package for sex determination using sam/bam files
software sex package
8.6 years ago Pau Marc Muñoz Torres ▴ 20
2
votes
4
replies
1.2k
views
Bioconductor package development
package R software development
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
0
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1
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300
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News: Bioconductor 3.19 Release Schedule
Release release Software
10 weeks ago • updated 7 weeks ago shepherl 3.9k
1
vote
3
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1.6k
views
Are there any bioconductor github mirrors for data packages?
software bioc-devel developers R
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
3
votes
6
replies
1.2k
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News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 14 months ago by • 0 • written 14 months ago by 3.9k
2
votes
1
reply
1.1k
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Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq microbiome Software
updated 8 months ago by ★ 4.1k • written 8 months ago by ▴ 10
1
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1
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1.1k
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How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
updated 4.5 years ago by ▴ 10 • written 4.5 years ago by ▴ 40
0
votes
1
reply
1.1k
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
4.8 years ago • updated 4.7 years ago shepherl 3.9k
0
votes
2
replies
826
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
0
votes
1
reply
1.2k
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Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
0
votes
2
replies
812
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What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 3.8 years ago by 3.9k • written 3.8 years ago by • 0
5
votes
1
reply
465
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.9k
0
votes
1
reply
878
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News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
5.0 years ago shepherl 3.9k
0
votes
1
reply
424
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Generate false reads for testing
mgu74bv2cdf Software Alignment
updated 11 months ago by 65k • written 11 months ago by • 0
0
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1
reply
870
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.4 years ago shepherl 3.9k
0
votes
0
replies
735
views
News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release Devel Bioconductor Software
19 months ago shepherl 3.9k
8
votes
0
replies
883
views
News: Bioconductor 3.15 is Released!
Software Release Packages Bioconductor
2.1 years ago • updated 2.0 years ago shepherl 3.9k
0
votes
0
replies
571
views
News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
14 months ago shepherl 3.9k
0
votes
0
replies
800
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Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
18 months ago Robert Castelo ★ 3.3k
0
votes
0
replies
456
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News: Bioconductor 3.18 Release Schedule
Release Software release
8 months ago shepherl 3.9k
1
vote
0
replies
811
views
News: Bioconductor 3.16 is Released!
Release Packages Bioconductor Software
18 months ago shepherl 3.9k
0
votes
0
replies
1.5k
views
News: The NIH Software Discovery Index | We invite your comments
software NIH index News
9.6 years ago Sean Davis 21k
4
votes
0
replies
145
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
18 days ago shepherl 3.9k
0
votes
0
replies
1.9k
views
Job: Harvard Medical School: Jr. Software Engineer/Biomedical Informatician
software engineer bioinformatician job Job
9.5 years ago Doe, Aimee ▴ 40
0
votes
0
replies
1.1k
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News: DEADLINE: All packages to pass R CMD build and R CMD check
release software experimentdata workflows News
6.1 years ago shepherl 3.9k
0
votes
1
reply
1.1k
views
News: List of Deprecated Package Bioc 3.9
deprecate release software devel News
5.4 years ago shepherl 3.9k
0
votes
1
reply
1.2k
views
News: List of Deprecated Package Bioc 3.9
deprecate release devel software experimentdata News
5.2 years ago shepherl 3.9k
0
votes
3
replies
1.1k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
5.0 years ago shepherl 3.9k
0
votes
0
replies
757
views
Job: Software Developer - BC Cancer Research Center, Vancouver BC
software bioinformatics sequecing Job
4.9 years ago jmaanaki • 0
0
votes
0
replies
862
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.7 years ago • updated 4.6 years ago shepherl 3.9k
2
votes
0
replies
2.3k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
4.7 years ago Laurent Gatto 1.6k
6
votes
0
replies
867
views
News: Bioconductor 3.10 is released!!
release software packages bioconductor News
4.6 years ago shepherl 3.9k
2
votes
2
replies
1.0k
views
News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
4.5 years ago shepherl 3.9k
0
votes
0
replies
893
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.5 years ago shepherl 3.9k
0
votes
0
replies
801
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.2 years ago shepherl 3.9k
4
votes
0
replies
828
views
News: Bioconductor 3.11 is Released!
software bioconductor release packages News
4.1 years ago shepherl 3.9k
0
votes
0
replies
840
views
News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
3.9 years ago shepherl 3.9k
3
votes
0
replies
1.4k
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
3.7 years ago • updated 3.6 years ago shepherl 3.9k
0
votes
0
replies
1.1k
views
Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
3.6 years ago Vincent J. Carey, Jr. 6.7k
4
votes
0
replies
954
views
News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
3.6 years ago shepherl 3.9k
0
votes
0
replies
611
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
12 months ago shepherl 3.9k
8
votes
0
replies
906
views
News: Bioconductor 3.14 is Released!
release Packages Software Release Bioconductor
2.6 years ago shepherl 3.9k
50 results • Page 1 of 1
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Answer: ERROR; return code from pthread_create() is 22 by James W. MacDonald 65k
Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
Answer: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments? by James W. MacDonald 65k
It appears that batch is orthogonal to the treatment, so you can just fit a batch effect in your model.
Answer: Control group between 2 batches have different expression in RNAseq data by James W. MacDonald 65k
Since batch is orthogonal to the treatment, you just add a batch factor to your model.
Answer: Subsetting RNAseq data | voomaByGroup() by Anna • 0
Hi Gordon. Thank you so much. Your reply is extremely helpful, and I feel more confident moving forward with the analysis. Also, very inte…
Votes
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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