Bioconductor Splicing

Showing : Splicing • reset

votes

252

views

splicing limma edgeR

updated 8 weeks ago by Gordon Smyth 50k • written 8 weeks ago by scoops_streams_06 • 0

votes

523

views

transcriptome splicing assembly

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by Marianna ▴ 20

votes

867

views

splicing Exon featureCounts subread DEXSeq

24 months ago • updated 23 months ago NIK • 0

votes

replies

697

views

psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.6 years ago noahhelton98 ▴ 20

votes

replies

2.2k

views

edger normalization differential exon usage splicing

updated 3.6 years ago by Yunshun Chen ▴ 840 • written 3.6 years ago by oakhamwolf • 0

votes

replies

1.1k

views

DEXSeq Splicing Exon Usage

4.3 years ago gunjan.dikshit • 0

votes

1.1k

views

ciri splicing splicesites

updated 4.3 years ago by lhddiallo • 0 • written 6.0 years ago by csijst • 0

votes

830

views

junctionseq splicing RNAseq DEXSeq

4.5 years ago stuart ▴ 10

vote

replies

1.6k

views

genomicalignments splicing coverage

updated 4.6 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by rasi1983 ▴ 10

votes

908

views

dexseq splicing sqtl qtl

updated 5.3 years ago by Alejandro Reyes ★ 1.9k • written 5.3 years ago by rtunney2 • 0

votes

replies

1.7k

views

deseq2 splicing

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by yannickwurm • 0

vote

replies

1.6k

views

DRIMSeq splicing differential isoform usage

updated 7.3 years ago by Gosia Nowicka ▴ 90 • written 7.3 years ago by kristoffer.vittingseerup ▴ 20

votes

replies

2.7k

views

sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 220 • written 8.2 years ago by vakul.mohanty ▴ 20

vote

replies

1.8k

views

microarray splicing

updated 8.3 years ago by Sonika Tyagi ▴ 20 • written 9.6 years ago by gv ▴ 40

votes

replies

1.5k

views

DEXSeq splicing python SAM

8.6 years ago Fiona ▴ 70

vote

replies

2.2k

views

SGSeq analyzeFeatures Splicing

9.4 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

Recent ...

Replies

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Awards • All

Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180