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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 3.2 years ago by • 0 • written 3.2 years ago by ▴ 90
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Job: Bioconductor Core developers group opening
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3.5 years ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
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updated 4.1 years ago by 68k • written 4.1 years ago by • 0
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python and R
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4.8 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
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5.8 years ago Raito92 ▴ 60
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Load data with rhdf5
rhdf5 python
updated 3.0 years ago by • 0 • written 5.8 years ago by • 0
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 6.5 years ago by ▴ 30 • written 6.5 years ago by ▴ 10
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6.5 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
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6.9 years ago Shamith.Samarajiwa ▴ 180
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7.0 years ago careers • 0
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
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7.5 years ago l.brown ▴ 10
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Python functionality feature request
python bioconductor
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
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7.9 years ago EMBL Recruitment • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
8.0 years ago ematsen ▴ 20
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
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9.5 years ago clif.duhn • 0
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
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9.8 years ago • updated 9.5 years ago clif.duhn • 0
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
10.0 years ago Doe, Aimee ▴ 40
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Convertion of indexed bam file to tsv file format
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updated 10.3 years ago by 16k • written 10.3 years ago by • 0
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
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10.3 years ago Fiona ▴ 70
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seq2pathway error on Mac OS X
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Job: Calling all Clinical Genomic Scientist
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10.6 years ago careers • 0
23 results • Page 1 of 1
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Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 150
This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…
Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
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Answer: Can you colour dendrogram branch clusters in pheatmap?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
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