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UcscTrack
•
reset
3
votes
5
replies
1.7k
views
UcscTrack and BED without headers
gviz
BED
Ucsc
UcscTrack
8.4 years ago
Andy91
▴ 60
2
votes
4
replies
2.8k
views
Error using Gviz and BiomartGeneRegionTrack, version problem?
Gviz-package
biomart
plottracks
ucsctrack
stickleback
updated 7.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.2 years ago by
br
• 0
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.2 years ago by
maximilianh
▴ 10 • written 7.2 years ago by
metamaden
▴ 10
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
paul.jaschke
▴ 10
1
vote
1
reply
1000
views
Gviz: UcscTrack() getting error when there is no genes in the region
givz
UcscTrack
7.7 years ago
shuoguo
▴ 10
1
vote
4
replies
4.3k
views
How to display gene symbols in UCSC Track in Gviz
gviz
ucsctrack
hgnc
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
Greg G.
• 0
0
votes
0
replies
927
views
Gviz: Is it possible to plot coding (thick boxes) and non-coding (thin boxes) regions for an UcscTrack?
Gviz
gene names
thinBoxFeature
UCSCtrack
7.8 years ago
angela.heck
• 0
0
votes
2
replies
1.2k
views
How to get UCSC url when use rtracklayer, contain the track in the url ,it may be very useful
rtracklayer
UCSC
ucsctrack
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
zhangqshxxzz
• 0
0
votes
0
replies
1.1k
views
gviz UcscTrack label with HGNC gene symbol
gviz
ucsctrack
genesymbols
7.6 years ago
dmb107
• 0
9 results • Page
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Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat
by
minardsmitha
▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons
by
boczniak767
▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.
Answer: How to run allelic imbalance in apeglm
by
Michael Love
42k
You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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