Showing : affydata • reset
0
votes
1
reply
511
views
Affymetrix hgu133plus2.db: How to best derive an expression value for genes that map to multiple probe ids
affydata hgu133plus2.db AffymetrixChip
updated 10 months ago by ★ 4.1k • written 10 months ago by ▴ 10
0
votes
2
replies
414
views
justRMA or similar for normalization with hg133a and hg133plus
hgu133plus2CellScore hthgu133a.db affydata
12 months ago Susanna • 0
0
votes
1
reply
2.6k
views
Reading sub-selected CEL files in R using ReadAffy()
Affy affydata
updated 7.1 years ago by 65k • written 7.1 years ago by ▴ 20
0
votes
1
reply
937
views
CEL file to expressionSet
affydata expressonset
updated 7.9 years ago by 65k • written 7.9 years ago by • 0
0
votes
5
replies
1.9k
views
collect an expression dataset
limma CEL GEO affydata expresiondataset
updated 8.5 years ago by ★ 3.3k • written 8.5 years ago by • 0
0
votes
1
reply
2.2k
views
Example on constructing AffyBatch object
Biobase affydata Biobase affydata
updated 13.9 years ago by 65k • written 13.9 years ago by ▴ 940
0
votes
1
reply
1.0k
views
getting original CEL files from Dilution
affydata affydata
updated 14.7 years ago by ★ 2.4k • written 14.7 years ago by ▴ 840
0
votes
0
replies
1.1k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
16.5 years ago Boel Brynedal ▴ 200
0
votes
7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 2.2k
0
votes
5
replies
1.9k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 16.9 years ago by 65k • written 16.9 years ago by ▴ 50
0
votes
0
replies
1.0k
views
Return of "I'm sorry, I do not know about chip type (foo)"
Survival cdf affydata limma gcrma matchprobes affyPLM simpleaffy Survival cdf affydata
16.9 years ago Dave Jacoby ▴ 20
0
votes
0
replies
912
views
Fwd: limma gene symbol not avialable problem
Microarray Annotation Cancer cdf probe annotate affy affydata limma matchprobes affyio
16.9 years ago lidaof ▴ 450
0
votes
3
replies
1.4k
views
limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 16.9 years ago by 65k • written 16.9 years ago by ▴ 450
0
votes
0
replies
855
views
simpleaffy problem - drosophila2
drosophila2 cdf affy affydata simpleaffy drosophila2 cdf affy affydata simpleaffy
17.0 years ago Yihuan Xu ▴ 130
0
votes
2
replies
1.6k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.1 years ago by 50k • written 17.1 years ago by ▴ 680
0
votes
1
reply
1.1k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 17.2 years ago by 50k • written 17.2 years ago by ★ 2.2k
0
votes
1
reply
1.4k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.2 years ago by 65k • written 17.2 years ago by ★ 2.2k
0
votes
8
replies
1.6k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 2.2k
0
votes
0
replies
1.2k
views
flagging spots in marray
aCGH Microarray Normalization GO Cancer Biobase annotate genefilter affy affydata limma
17.4 years ago Gordon Smyth 50k
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
votes
10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.5 years ago by ▴ 460 • written 17.5 years ago by ▴ 70
0
votes
1
reply
2.8k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 17.5 years ago by 65k • written 17.5 years ago by ▴ 510
0
votes
12
replies
2.0k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.5 years ago by ★ 5.5k • written 17.5 years ago by ▴ 460
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.5 years ago by ▴ 190 • written 17.5 years ago by ★ 2.9k
0
votes
0
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
17.6 years ago Martin Morgan 25k
0
votes
4
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.6 years ago by 25k • written 17.6 years ago by ★ 2.2k
0
votes
2
replies
1.1k
views
"normalize.quantiles.robust" produces the SAME intensities from different weights?!
Normalization affydata gcrma matchprobes affyPLM affyio Normalization affydata gcrma
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 420
0
votes
0
replies
970
views
method for removing consistent technical bias?
affy affydata vsn limma gcrma matchprobes affyPLM affyio affy affydata vsn limma gcrma
17.7 years ago k. brand ▴ 420
0
votes
0
replies
942
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.7 years ago k. brand ▴ 420
0
votes
1
reply
886
views
qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 10
0
votes
2
replies
1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.8 years ago Jenny Drnevich ★ 2.2k
0
votes
1
reply
1.1k
views
qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 160
0
votes
3
replies
1.5k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.1 years ago by ▴ 70 • written 18.1 years ago by ★ 2.2k
0
votes
0
replies
912
views
missing function in duplicateCorrelation?
Biobase affy affydata limma affyPLM Biobase affy affydata limma affyPLM
18.4 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
864
views
A question about paired data and how to set up the designmatrix in LIMMA]
affydata limma affydata limma
18.8 years ago Gordon Smyth 50k
1
vote
1
reply
1.2k
views
A question about paired data and how to set up the designmatrix in LIMMA
affydata limma affydata limma
18.8 years ago Gordon Smyth 50k
0
votes
0
replies
927
views
differences or 1-channel (was Re: Agilent Arrays)
Normalization GO probe affy affydata vsn limma marray BEAT Normalization GO probe affy
18.9 years ago Naomi Altman ★ 6.0k
0
votes
2
replies
1.3k
views
Bioconductor Digest, Vol 28, Issue 23
Normalization probe affy affydata limma marray BEAT Normalization probe affy affydata
updated 18.9 years ago by ★ 13k • written 18.9 years ago by 50k
0
votes
1
reply
1.1k
views
affy package in MacOSX
affy affydata matchprobes affyPLM affy affydata matchprobes affyPLM
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 20.7 years ago by 6.7k • written 20.7 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 21.0 years ago by ★ 2.9k • written 21.0 years ago by ▴ 130
0
votes
3
replies
891
views
Error loading reposTools
reposTools affy affydata reposTools affy affydata
21.0 years ago Warnes, Gregory R ▴ 460
42 results • Page 1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Awards • All
Popular Question to euge.eugenio ▴ 20
Popular Question to Dario Strbenac ★ 1.5k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Locations • All
United States, 42 minutes ago
Melbourne, Australia, 44 minutes ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
The city by the bay, 2 hours ago
Traffic: 327 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6