Bioconductor Hgu133plus2.db

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528

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affydata hgu133plus2.db AffymetrixChip

updated 10 months ago by ATpoint ★ 4.2k • written 10 months ago by Matthias Munz ▴ 10

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542

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hgu133plus2hsentrezg.db chiptype chipster hgu133plus2.db AffymetrixChip

11 months ago alexia.brunel • 0

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990

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hgu133plus2.db limma DifferentialExpression affy

updated 3.0 years ago by Gordon Smyth 50k • written 3.0 years ago by Caamp • 0

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11k

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microarray software error hgu133plus2.db

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by naf • 0

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960

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aafTableAnn microarray annafy hgu133plus2.db

updated 5.4 years ago by James W. MacDonald 66k • written 5.4 years ago by maxininfa • 0

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1.3k

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annotation hgu133plus2.db affymetrix microarrays micorarray

updated 5.5 years ago by James W. MacDonald 66k • written 5.5 years ago by 2323982403 ▴ 60

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1.1k

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hgu133plus2.db

updated 7.5 years ago by James W. MacDonald 66k • written 7.5 years ago by arkajyoti.bhattacharya • 0

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1.3k

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hgu133plus2.db

8.5 years ago matheus.cburger ▴ 20

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1.9k

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gene ID hgu133plus2.db

updated 9.5 years ago by James W. MacDonald 66k • written 9.5 years ago by nicolas.julien.jung • 0

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Comment: Deseq2 by Ram ▴ 210

Cross-posted on biostars: https://www.biostars.org/p/9596031/

Comment: SpliceWiz collateData error by giulia.nicoletto.1 • 0

Hi there, I am facing a similar error. When I try the collateData command collateData( Experiment = expr, reference_path = "./Referen…

Answer: Best way to describe DEseq2 design by SamGG ▴ 350

Hi, My own opinion. In the design `~ Batch`, ChemicalA_t1 is the intercept. So, all coefficients refer to this level as a reference. …

Answer: Deseq2 by ATpoint ★ 4.2k

Ser the vignette https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html It covers prefiltering (and everyt…

Comment: Counter-directional LFC shrinkage by Michael Love 42k

Gene 1 is hard to predict given the paucity of data for the comparison of interest. What is happening is that the relatively low dispersion…

Votes

Answer: Deseq2

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: When should I correct for batch effects

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Popular Question to Levi Waldron ★ 1.1k

Popular Question to Laure Cougnaud ▴ 20